Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01283 ATGAAGCTCATCCCCTTCCTTCCATGGCTGAACCTCCACATGGCCCTCTTCTTCTTCTTCTTCTTCCTTGCTTCTTCTTCACTTCTTCATTCATCCCCTGCCTCTTCACTTCCCCACAATGAAGGACGAGCGCTTATGTCAATCAAGGCCTCGTTTAGCAATGTAGCTAATGTGTTGCTTGACTGGGATGACGATCACAACCACGATTTCTGTTCATGGCGTGGAGTTTTCTGCGACAATGTTAGCCTTTCTGTTGCTGCTTTGAACTTGTCCAACTTGAATCTGGGTGGGGAGATTTCACCATCCATTGGAGATTTGAGAAACTTACAGTCAATTGACTTTCAAGGGAATAAACTGACTGGCCAAATCCCTGATGAGATCGGTAACTGTGGTCTTCTTGTCCATTTGGACTTGTCTGATAATTTGCTCTATGGAGACATCCCCTTCACGGTTTCAAAGCTAAAGCAGCTCGAGTTTTTAAATATGAAGAACAATCAGTTGACCGGTCCGATTCCTTCAACCTTAACCCAGATTCCCAATCTGAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGGGAGATACCTAGATTAATCTATTGGAATGAAGTTCTGCAATATCTTGGATTACGAGGGAACTTTTTGACAGGGTCGTTGTCTTCCGATATGTGTCAATTGACTGGCTTGTGGTATTTTGATGTAAGGGGAAATAATCTGACTGGAACAATACCGGATAGCATAGGAAACTGTACCAGTTTTGAAATTCTGGATATATCGTACAATCAGATCTCGGGAGAGATTCCATACAACATTGGATTTCTACAAGTGGCCACTTTATCATTACAGGGAAATAGGTTGAGTGGTAAGATTCCTGATGTCATTGGATTGATGCAGGCCCTTGCTGTTCTGGATTTGAGTGAGAATGAGCTTGAAGGACCAATACCGCCAATACTTGGCAACTTGTCCTACACAGGAAAATTGTATCTACATGGAAACAAGTTGACTGGGTCAATTCCTCCTGAGCTGGGCAATATGTCAAAACTTAGCTACTTGCAACTAAATGATAACCAGTTGGTTGGCACAATTCCTTCTGAACTTGGGAAATTGGATCAGTTGTTTGAATTAAATCTTGCCAATAATTATCTTGAAGGACCCATCCCTCATAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCACGGAAACAATCTTAATGGATCAATCCCTTTGGGTTTCCAAAATCTGGAGAGCTTGACCTATTTGAACCTTTCGGCAAACAACTTCAAAGGCAGGATTCCCATGGAGCTGGGGCGCATAGTAAACCTCGATACATTTTGGCTTAAAGTTTTTGTTTCATCCAGGGATCTATCTTGCAATTACTTCTTGGGTCCGGTTCCTGCTTCTATTGGTGATTTGGAACACCTTCTTAGCCTCAATTTGAGCAATAACCGACTCGTCGGGCCGTTGCCGGCAGAATTTGGGAATCTCCGAAGTGTTCAGACTATACTTGCCTGTTTTGATAGTGATATGTCATTCAACAACTTTTCTGGTAGCATACCCATGGAGTTGGGTCAACTGCAAAATATTATCTCCCTCATTTTGAACAACAACCATTTTCAAGGGAAAATACCTGATCAGCTGACTAATTGTTTTAGTCTTGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCCATGAAAAATTTCTCTCGATTCGAACCATATAGCTTTATCGGGAATCCGCTGCTGTGTGGAAACTGGCTGGGGTCGATCTGTGGGCCTTATATGGAAAAATCTCGAGCAATGTTGTCTCGGACAGTGGTTGTTTGTATGACATTTGGATTCATAGTATTGTTGTCGATGGTTATAATTGCCGTTTACAAGTCGAATCCCTCGAAGCAATTGATGAAGGGTTCAAGCAAGACCGGGCAAGGCAAGCATTGTTTCTCTATTTTCTGTTTTTCTTTTTATATTTATTCCTATTTGATCGATGATGCATCCTTATTTTGTAATTCAGTTCCTCCAAATCTTGTGGTACTTCATATGGATATGGCTATTCACACCTTTGAGGACATTATGAGAATGACTGAGAATCTAAGCGAGAAGTACATTATTGGTTACGGAGCTTCTAGCACTGTGTACAAATGTTTACTGAAAAATTCCCGACCTATTGCAATTAAGCGACTTTATAATCACTACGCACACAATTTACGGGAGTTTGAGACCGAACTCGAAACCATTGGTAGTATCAGACATAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCACTCTGGGATCTGCTTCATGGGACAGGTAAGAAGGTTAAACTGGATTGGGAAGCACGTCTGAAAATTGCGGTTGGAGCTGCGCAAGGGCTTGCATATCTTCACCATGATTGTAACCCCCGAATCATTCACCGGGATGTCAAGTCTTCAAATATTCTACTGGATGAAAATTTTGAGGCCCATCTTTCTGATTTCGGGATTGCCAAATGCATCCCAACTGCCAAAACACACGCGTCGACTTATGTGCTTGGAACAATTGGCTACATTGATCCGGAGTATGCCCGGACCTCCCGGCTTAACGAGAAGTCTGATGTTTATAGCTTTGGCATTGTTCTTCTTGAACTACTGACCGGGAAGAAAGCTGTGGATGATGAGTCCAATTTGCATCAGCTGATATTGTCCAAGACTGATAACAATACCGTGATGGAAGCTGTTGATCCTGAGGTTTCAGTCACCTGCATTGATTTAGCCCATGTTCGAAAAATGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCCCTCCGAACGGCCAACCATGCATGAAGTTGCACGAGTATTGATCTCCCTCCAGCCACCACCCCCACCTACTGTGAAACAAACTTCATTCCCCACGAAAACGTTGGATTATGCACAGTTTGTGATCGAAAAGGGTCAGAATCGAAACTTGAAAGGGCAGGAGGAGCAGCAGAAGTCAGATGTGAATACTTCGGATGCTCGGTGGTTTGTTCGGTTTGGGGAAGTGATGTCTGAACAACACAGTTTGAATCAATAA 3126 42.51 MKLIPFLPWLNLHMALFFFFFFLASSSLLHSSPASSLPHNEGRALMSIKASFSNVANVLLDWDDDHNHDFCSWRGVFCDNVSLSVAALNLSNLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGLLVHLDLSDNLLYGDIPFTVSKLKQLEFLNMKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLSGKIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGSIPPELGNMSKLSYLQLNDNQLVGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNNLNGSIPLGFQNLESLTYLNLSANNFKGRIPMELGRIVNLDTFWLKVFVSSRDLSCNYFLGPVPASIGDLEHLLSLNLSNNRLVGPLPAEFGNLRSVQTILACFDSDMSFNNFSGSIPMELGQLQNIISLILNNNHFQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEPYSFIGNPLLCGNWLGSICGPYMEKSRAMLSRTVVVCMTFGFIVLLSMVIIAVYKSNPSKQLMKGSSKTGQGKHCFSIFCFSFYIYSYLIDDASLFCNSVPPNLVVLHMDMAIHTFEDIMRMTENLSEKYIIGYGASSTVYKCLLKNSRPIAIKRLYNHYAHNLREFETELETIGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGTGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQLILSKTDNNTVMEAVDPEVSVTCIDLAHVRKMFQLALLCTKHNPSERPTMHEVARVLISLQPPPPPTVKQTSFPTKTLDYAQFVIEKGQNRNLKGQEEQQKSDVNTSDARWFVRFGEVMSEQHSLNQ 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19222127 19228024 - ClCG09G013300.1 Cla09g01283 280703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01283 1041 SUPERFAMILY Protein kinase-like (PK-like) 687 972 IPR011009 -
Cla09g01283 1041 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
Cla09g01283 1041 Gene3D Ribonuclease Inhibitor 276 361 IPR032675 -
Cla09g01283 1041 Gene3D Ribonuclease Inhibitor 452 599 IPR032675 -
Cla09g01283 1041 Pfam Leucine Rich Repeat 180 198 IPR001611 GO:0005515
Cla09g01283 1041 CDD STKc_IRAK 711 974 - -
Cla09g01283 1041 Gene3D Phosphorylase Kinase; domain 1 678 780 - -
Cla09g01283 1041 SUPERFAMILY RNI-like 221 571 - -
Cla09g01283 1041 ProSiteProfiles Protein kinase domain profile. 705 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01283 1041 Gene3D Ribonuclease Inhibitor 38 201 IPR032675 -
Cla09g01283 1041 Gene3D Ribonuclease Inhibitor 362 451 IPR032675 -
Cla09g01283 1041 ProSiteProfiles Leucine-rich repeat profile. 180 202 IPR001611 GO:0005515
Cla09g01283 1041 Gene3D Ribonuclease Inhibitor 202 275 IPR032675 -
Cla09g01283 1041 Gene3D Transferase(Phosphotransferase) domain 1 781 978 - -
Cla09g01283 1041 SMART LRR_typ_2 528 552 IPR003591 -
Cla09g01283 1041 SMART LRR_typ_2 106 130 IPR003591 -
Cla09g01283 1041 SMART LRR_typ_2 178 202 IPR003591 -
Cla09g01283 1041 SMART LRR_typ_2 417 441 IPR003591 -
Cla09g01283 1041 SMART LRR_typ_2 297 321 IPR003591 -
Cla09g01283 1041 SMART LRR_typ_2 474 497 IPR003591 -
Cla09g01283 1041 SMART LRR_typ_2 154 177 IPR003591 -
Cla09g01283 1041 SMART LRR_typ_2 345 369 IPR003591 -
Cla09g01283 1041 SMART LRR_typ_2 226 250 IPR003591 -
Cla09g01283 1041 SMART serkin_6 705 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01283 1041 ProSitePatterns Protein kinases ATP-binding region signature. 711 733 IPR017441 GO:0005524
Cla09g01283 1041 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 32 1014 - -
Cla09g01283 1041 SUPERFAMILY L domain-like 39 321 - -
Cla09g01283 1041 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 32 1014 - -
Cla09g01283 1041 Pfam Protein kinase domain 708 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01283 1041 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01630 Cla-Chr5:27689448 Cla09g01283 Cla-Chr9:19222127 0 dispersed
Cla09g00977 Cla-Chr9:10257537 Cla09g01283 Cla-Chr9:19222127 2.12E-128 dispersed
Cla09g01283 Cla-Chr9:19222127 Cla03g00383 Cla-Chr3:4416387 5.72E-36 dispersed
Cla09g01283 Cla-Chr9:19222127 Cla01g01761 Cla-Chr1:32517304 1.57E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80810 PF00069 Pkinase 3.20E-42 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01283 K20718 - csv:101213139 1808.5