Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01310 ATGTTGTTTCAGTTTTTGGGTGAAGTTTGGAAGATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAGGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCTGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGTTCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTGA 1167 46.53 MLFQFLGEVWKMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20336805 20339925 - ClCG09G013550.2 Cla09g01310 280730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01310 388 ProSitePatterns Actins signature 2. 369 377 IPR004001 -
Cla09g01310 388 PRINTS Actin signature 153 172 IPR004000 -
Cla09g01310 388 PRINTS Actin signature 74 96 IPR004000 -
Cla09g01310 388 PRINTS Actin signature 39 48 IPR004000 -
Cla09g01310 388 PRINTS Actin signature 128 141 IPR004000 -
Cla09g01310 388 PRINTS Actin signature 62 73 IPR004000 -
Cla09g01310 388 PRINTS Actin signature 249 265 IPR004000 -
Cla09g01310 388 ProSitePatterns Actins signature 1. 66 76 IPR004001 -
Cla09g01310 388 Pfam Actin 16 388 IPR004000 -
Cla09g01310 388 SUPERFAMILY Actin-like ATPase domain 160 388 IPR043129 -
Cla09g01310 388 Gene3D - 21 382 - -
Cla09g01310 388 ProSitePatterns Actins and actin-related proteins signature. 117 129 IPR020902 -
Cla09g01310 388 PANTHER ACTIN-2-LIKE 12 387 - -
Cla09g01310 388 CDD NBD_sugar-kinase_HSP70_actin 21 194 - -
Cla09g01310 388 Gene3D - 151 351 - -
Cla09g01310 388 SMART actin_3 18 388 IPR004000 -
Cla09g01310 388 PANTHER ACTIN 12 387 IPR004000 -
Cla09g01310 388 SUPERFAMILY Actin-like ATPase domain 17 166 IPR043129 -
Cla09g01310 388 Gene3D Actin; Chain A, domain 4 193 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01310 K10355 ACTF; actin, other eukaryote - csv:101214459 755.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01971 Cla-Chr2:34771151 Cla09g01310 Cla-Chr9:20336805 0 dispersed
Cla09g00372 Cla-Chr9:3638922 Cla09g01310 Cla-Chr9:20336805 7.16E-61 dispersed
Cla09g01310 Cla-Chr9:20336805 Cla10g01670 Cla-Chr10:32418651 0 dispersed
Cla09g01310 Cla-Chr9:20336805 Cla02g00072 Cla-Chr2:718261 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.9e-215 743.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.9e-214 740.7
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.0e-213 738.4
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.2e-212 734.9
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT2G37620 94.5 6.5e-209 723.4
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.5e-200 693.7
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT2G37620 96.5 4.6e-178 620.9
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 5.2e-214 740.3
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.7e-214 740.0
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.5e-213 738.8
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 9.1e-211 729.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT5G59370 95.5 1.2e-210 729.2
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.5e-197 683.3
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT5G59370 96.2 4.3e-176 614.4
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 3.0e-214 741.1
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.7e-214 740.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.5e-213 738.8
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 4.1e-211 730.7
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT3G46520 95.8 5.3e-211 730.3
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.4e-197 684.5
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G46520 96.5 1.9e-176 615.5
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.6e-215 744.2
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.7e-215 743.8
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.8e-214 741.9
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.7e-213 736.1
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.8e-212 734.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT3G12110 94.7 1.0e-209 726.1
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.1e-199 691.8
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G12110 96.2 2.3e-177 618.6
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.0e-209 723.8
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.9e-208 721.8
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.5e-208 721.5
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.4e-208 719.5
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cla09g01925 . 3 383 Cytoskeleton Gene Families AT3G18780 91.3 6.7e-206 713.4
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.8e-196 680.6
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G18780 92.8 3.4e-173 604.7
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.5e-209 723.4
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.5e-209 723.0
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.2e-208 720.7
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.1e-207 718.4
Cla09g01925 . 2 383 Cytoskeleton Gene Families AT1G49240 91.1 5.2e-206 713.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.7e-196 682.2
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT1G49240 92.8 3.4e-173 604.7
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.5e-217 749.6
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 3.0e-214 741.1
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.7e-214 740.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.3e-213 737.6
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.3e-213 737.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT5G09810 94.2 1.9e-208 721.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.1e-203 704.5
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT5G09810 96.5 1.7e-177 619.0
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 9.0e-57 216.5
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.8e-55 211.1
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT2G19760 73.3 1.9e-54 208.8
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 5.5e-54 207.2
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT4G29350 71.8 2.1e-53 205.3
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 8.8e-52 199.9
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.6e-64 242.3
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.2e-57 218.0
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT4G29340 73.1 2.5e-54 208.4
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT4G29340 67.9 5.2e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g01310 Cla_Chr09 FPKM 140.876251 154.730743 149.809357 149.218842 155.250778 165.330185 165.684067 206.466583 214.403152 221.034454