Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01310 ATGTTGTTTCAGTTTTTGGGTGAAGTTTGGAAGATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAGGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCTGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGTTCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTGA 1167 46.53 MLFQFLGEVWKMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20336805 20339925 - ClCG09G013550.2 Cla09g01310 280730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01310 388 ProSitePatterns Actins signature 2. 369 377 IPR004001 -
Cla09g01310 388 PRINTS Actin signature 153 172 IPR004000 -
Cla09g01310 388 PRINTS Actin signature 74 96 IPR004000 -
Cla09g01310 388 PRINTS Actin signature 39 48 IPR004000 -
Cla09g01310 388 PRINTS Actin signature 128 141 IPR004000 -
Cla09g01310 388 PRINTS Actin signature 62 73 IPR004000 -
Cla09g01310 388 PRINTS Actin signature 249 265 IPR004000 -
Cla09g01310 388 ProSitePatterns Actins signature 1. 66 76 IPR004001 -
Cla09g01310 388 Pfam Actin 16 388 IPR004000 -
Cla09g01310 388 SUPERFAMILY Actin-like ATPase domain 160 388 IPR043129 -
Cla09g01310 388 Gene3D - 21 382 - -
Cla09g01310 388 ProSitePatterns Actins and actin-related proteins signature. 117 129 IPR020902 -
Cla09g01310 388 PANTHER ACTIN-2-LIKE 12 387 - -
Cla09g01310 388 CDD NBD_sugar-kinase_HSP70_actin 21 194 - -
Cla09g01310 388 Gene3D - 151 351 - -
Cla09g01310 388 SMART actin_3 18 388 IPR004000 -
Cla09g01310 388 PANTHER ACTIN 12 387 IPR004000 -
Cla09g01310 388 SUPERFAMILY Actin-like ATPase domain 17 166 IPR043129 -
Cla09g01310 388 Gene3D Actin; Chain A, domain 4 193 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01971 Cla-Chr2:34771151 Cla09g01310 Cla-Chr9:20336805 0 dispersed
Cla09g00372 Cla-Chr9:3638922 Cla09g01310 Cla-Chr9:20336805 7.16E-61 dispersed
Cla09g01310 Cla-Chr9:20336805 Cla10g01670 Cla-Chr10:32418651 0 dispersed
Cla09g01310 Cla-Chr9:20336805 Cla02g00072 Cla-Chr2:718261 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01310 K10355 - csv:101214459 755.362