Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g01320 | ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCAGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCCACCGCTCAACACCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG | 801 | 46.57 | MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA | 266 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 20823609 | 20824409 | - | ClCG09G013645.1 | Cla09g01320 | 280740 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g01320 | 266 | Gene3D | Histone, subunit A | 64 | 181 | IPR009072 | GO:0046982 | |
| Cla09g01320 | 266 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 9 | 260 | - | - | |
| Cla09g01320 | 266 | Pfam | Core histone H2A/H2B/H3/H4 | 56 | 166 | IPR007125 | GO:0003677 | |
| Cla09g01320 | 266 | MobiDBLite | consensus disorder prediction | 236 | 266 | - | - | |
| Cla09g01320 | 266 | MobiDBLite | consensus disorder prediction | 250 | 266 | - | - | |
| Cla09g01320 | 266 | MobiDBLite | consensus disorder prediction | 55 | 76 | - | - | |
| Cla09g01320 | 266 | SUPERFAMILY | Histone-fold | 59 | 175 | IPR009072 | GO:0046982 | |
| Cla09g01320 | 266 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
| Cla09g01320 | 266 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Cla09g01320 | 266 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 9 | 260 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g01621 | Cla-Chr3:32096760 | Cla09g01320 | Cla-Chr9:20823609 | 9.75E-79 | dispersed | |
| Cla06g01745 | Cla-Chr6:31009024 | Cla09g01320 | Cla-Chr9:20823609 | 1.80E-68 | dispersed | |
| Cla09g01320 | Cla-Chr9:20823609 | Cla11g01280 | Cla-Chr11:26323251 | 1.80E-12 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61753 | PF00125 | Histone | 6.00E-18 | CL0012 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g01320 | K08066 | - | csv:101213813 | 417.157 |