Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01320 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCAGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCCACCGCTCAACACCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 801 46.57 MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA 266
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 20823609 20824409 - ClCG09G013645.1 Cla09g01320 280740
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01320 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Cla09g01320 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 260 - -
Cla09g01320 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677
Cla09g01320 266 MobiDBLite consensus disorder prediction 236 266 - -
Cla09g01320 266 MobiDBLite consensus disorder prediction 250 266 - -
Cla09g01320 266 MobiDBLite consensus disorder prediction 55 76 - -
Cla09g01320 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982
Cla09g01320 266 MobiDBLite consensus disorder prediction 1 76 - -
Cla09g01320 266 MobiDBLite consensus disorder prediction 1 39 - -
Cla09g01320 266 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 260 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01621 Cla-Chr3:32096760 Cla09g01320 Cla-Chr9:20823609 9.75E-79 dispersed
Cla06g01745 Cla-Chr6:31009024 Cla09g01320 Cla-Chr9:20823609 1.80E-68 dispersed
Cla09g01320 Cla-Chr9:20823609 Cla11g01280 Cla-Chr11:26323251 1.80E-12 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61753 PF00125 Histone 6.00E-18 CL0012 Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01320 K08066 - csv:101213813 417.157