Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01326 ATGGACAACATTACTGCCCAATTAAAGAGGGGAATCTCCCGCCAATTCTCCACCGGCTCCTTACGCCGAACCCTAAGTCGTCAGTTCACCCGCCAATCCTCTCTTGACCCTAGGAGGAACAATTTGAGATTCAGCTTTGGCCGACAATCTTCTTTGGACCCTATTCGCCGCTGTCCTGATGATGATAATGAGCTTTCCGTTCCTGAGAATTTGGATTCCACTATGCAGCTTCTCTTTATGGCCTGCCGTGGCGATGTTAGAGGCGTTGAGGATTTGCTTAATGATGGTACTGATGTTAATAGTATTGATTTGGATGGCCGCACTGCTTTGCATATTGCTGCCTGTGAAGGTCATGCTGAGGTTGTTAAGCTTTTGCTTAGCCGTAGGGCTAATATTGACGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCAGATGCTAAATATTACGGAAATACAGAAATTTACAACATTCTGAAGGCACGTGGAGCAAAAGTTCCGAAATTTAGGAAGACACCAATGACTGTTGCAAATCCTAGGGAAGTTCCTGAGTATGAGCTTAATCCATTGGAACTTCAGATTCGAAGGAGTGATGGTATATCAAAGGGGACGTATCAAGTTGCCAAATGGAATGGTACAAAAGTCACTGTGAAAATTCTTGATAAAGATTGTTATTGTAACCCGGATTCTATAAATGCATTCAAACATGAGTTGACATTATTGGAAAAGGTCCGACATCCCAATGTAGTTCAGTTTGTTGGTGCCGTTACCCAGAATTTGCCAATGATGATTGTTTCCGAATACCATCCTAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTTTATCTCCATCTAAAGCCTTAAGATTCGCCCTTGATATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCGGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTTAAAGTCGCTGGATTCGGCTTGATAAGATTGTCAAAAATGTCACCTGACAAAGCAAAACTAGCTCAGCCAGTGGTTATTGATTATTCGAACTCGTACTTAGCACCCGAGATTTACCACGATGAAATATTTGACAGAAGCGTCGATGCATTTTCATTCGGTCTCATTTTATACGAGATGGTTGAGGGTATTCAACCATTTCATCCCAAGCCTCCAGAAGAGGTTGCCAAAGCTATTTGTGCAGAAGGAAAGAGACCTCCATTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGATCCAGAACCTGTAATGAGGCCTACTTTCTCCGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGGTGGTGGAAAGACACATTTAAACTTCCCTGGAAATAA 1422 42.12 MDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDDDNELSVPENLDSTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKLLLSRRANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGTYQVAKWNGTKVTVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSPDKAKLAQPVVIDYSNSYLAPEIYHDEIFDRSVDAFSFGLILYEMVEGIQPFHPKPPEEVAKAICAEGKRPPFKIKSKSYPPDLKELIEECWDPEPVMRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWK 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21182462 21186930 + ClCG09G013700.2 Cla09g01326 280746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01326 473 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Cla09g01326 473 SUPERFAMILY Protein kinase-like (PK-like) 202 451 IPR011009 -
Cla09g01326 473 SMART serkin_6 193 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01326 473 PIRSF ILK 8 472 - -
Cla09g01326 473 SUPERFAMILY Ankyrin repeat 73 176 IPR036770 -
Cla09g01326 473 Gene3D Phosphorylase Kinase; domain 1 187 268 - -
Cla09g01326 473 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 33 471 - -
Cla09g01326 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Cla09g01326 473 Pfam Ankyrin repeats (3 copies) 80 165 IPR002110 GO:0005515
Cla09g01326 473 Pfam Protein tyrosine and serine/threonine kinase 200 450 IPR001245 GO:0004672|GO:0006468
Cla09g01326 473 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Cla09g01326 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 471 - -
Cla09g01326 473 SMART ANK_2a 73 101 IPR002110 GO:0005515
Cla09g01326 473 SMART ANK_2a 138 167 IPR002110 GO:0005515
Cla09g01326 473 SMART ANK_2a 105 134 IPR002110 GO:0005515
Cla09g01326 473 Gene3D Transferase(Phosphotransferase) domain 1 269 467 - -
Cla09g01326 473 ProSiteProfiles Protein kinase domain profile. 189 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01326 473 CDD STKc_MAP3K-like 199 451 - -
Cla09g01326 473 Gene3D - 48 184 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00315 Cla-Chr2:3055696 Cla09g01326 Cla-Chr9:21182462 1.90E-15 dispersed
Cla02g01792 Cla-Chr2:32948878 Cla09g01326 Cla-Chr9:21182462 5.11E-34 dispersed
Cla03g00686 Cla-Chr3:8320961 Cla09g01326 Cla-Chr9:21182462 1.43E-140 dispersed
Cla09g01326 Cla-Chr9:21182462 Cla05g02419 Cla-Chr5:35702973 1.53E-56 dispersed
Cla09g01326 Cla-Chr9:21182462 Cla01g02349 Cla-Chr1:37242729 6.49E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80811 PF07714 PK_Tyr_Ser-Thr 2.80E-50 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01326 - - csv:101213574 942.184