Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01444 ATGGCTTCTCATTCCCCTAACCTCGAGTGTCGGATGTACGAAGCAAAGTACCCCGAGGTCGACATGGCCGTCATGATCCAGGTCAAAAACATCGCCGACATGGGCGCTTACGTCTCCCTTCTTGAGTACAACAACATTGAGGGTATGATTCTATTCTCCGAGCTCTCTCGCCGTCGAATTCGTAGTGTCAGCAGCTTAATTAGGGTCGGTCGAATCGAGCCCGTCATGGTCCTCAGGGTCGATAAGGAGAAGGGTTATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGTGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTCGCTGAGACTATGAACATTGATTTGGAGGACTTGTATATCCATGTTGGCTGGCCTTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAGATCATTGTAACTGACCCTGACTCGGTGTTGAATTCTCTCACCCGTGAAGTAAAGGAAGCTGGTCCTGATGGACAGGAGGTAACTAAGATAGTTCCTGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCGTTGAAGGTCCGAGCTGATATTGAGATGAAGTGTTTCCAATTTGATGGCGTTCTTCACATTAAGGAAGCAATGCGTAAAGCTGAAGCTGCTGGAAACGATGATTGTCCTGTTAAAATTAAGTTGGTTGCTCCTCCCCTCTATGTCCTTACTACTCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAAAAAGCAATCATGGCTTGCACCGAGGCAATTGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGACACCCAGAGCGGTGAGTCTTGTGAGTGAAAGAGATGACAAGTTGCTTGCCGAGCACATGGCGAAGCTACGACAAGATAATGAAGAAATCAGCGGAGATGAGGATAGCGAGGAAGAGGAAGACACGGGAATGGGAGAAGTCGATGTTGAGAATGCAGGTTCTGGGATCACTGAGTAA 1044 46.46 MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIRVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLEDLYIHVGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEVTKIVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIMACTEAIEHHKGKLVVKETPRAVSLVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGSGITE 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27560090 27565378 - ClCG09G014780.2 Cla09g01444 280864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01444 347 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676
Cla09g01444 347 MobiDBLite consensus disorder prediction 312 347 - -
Cla09g01444 347 PANTHER BNAC04G04870D PROTEIN 5 347 - -
Cla09g01444 347 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 172 IPR024054 -
Cla09g01444 347 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676
Cla09g01444 347 Gene3D EIF_2_alpha 205 330 IPR024055 -
Cla09g01444 347 SMART S1_6 19 92 IPR022967 -
Cla09g01444 347 SUPERFAMILY Nucleic acid-binding proteins 15 97 IPR012340 -
Cla09g01444 347 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723
Cla09g01444 347 MobiDBLite consensus disorder prediction 319 335 - -
Cla09g01444 347 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723|GO:0003743
Cla09g01444 347 Coils Coil 309 329 - -
Cla09g01444 347 Gene3D - 6 94 IPR012340 -
Cla09g01444 347 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 5 347 IPR011488 GO:0003723|GO:0003743
Cla09g01444 347 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
Cla09g01444 347 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 322 IPR024055 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01444 Cla-Chr9:27560090 Cla08g00263 Cla-Chr8:5477473 1.46E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01444 K03237 - csv:101209681 627.861