Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01478 ATGATCTGTGGAGAGATGAGAAGCAATGAAATGGGGAGAGCAACGTTGATGTTTTCAGCGTTTTCTCCTTTCCTGCGCTTAATTTTGGCTATGGCTTTCGTTTTACGGGTGTCTGCAAATGGGGAAGGTGATGCCCTAAATGCCTTCAAGTTGAGTTTGGTTGACCCCAACAATGTCTTGCAAAGTTGGAATACCATTCTTATGAATCCTTGCACATGGTTTCATGTTACATGTGATGAAAAAGAAAGTGTTATACGTGTTGATCTTGGTAATGCCAATCTGTCTGGAAAACTGGTTCCACAGCTTGATCAACTCACAAACTTGCGGTACTTGGAACTCTACAGCAATAATATCAGCGGAACAATTCCAGAAAGATTTGGAAATTTGAAAAACTTGGAGAGCTTGGATCTTTATTCTAACAGTTTAACTGGTCCCATACCTGACACACTGGGCAAACTTACAAAACTAAGTACCTTGCGTCTGAACAACAATAGCTTATCAGGAACCATTCCAATGTCTTTAACCACTGTTCCACTTCAACTTCTGTTTTCCGTAGATGATAGTGATATATCCACCCAATTTTGTTTCAGGGATCTTTCAAATAACCTTCTAACAGGAGACATTCCTGTCAATGGTTCGTTCTCTCTTTTCACACCAATCAGTTTTGCCAATAATCTTCTTCACATTTCTCCCTCTGCTCCTCCTCCGCCAACGAGAGATACACCACGAACATCTTCAGGTGATGGGGCTAATGGAGTCATTGTTGGAGCAATTGTTGCTGCTGCTGCTTTGCTGGTTGTTGTGCCTGCTACTGCACTTAATCTTTGGCGACGAAAAACTCAACAGGACCACTTCTTTGATGTAGCTGCTGAAGAAGATCCTGAAATTAACCTGGGCCAGCTCAAAAAATATTCTCTGGGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAGAACATTTTGGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGATTGAAGGAGCAGCCTGCTGAGGTTGGAGAGCTTCAATTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTCCATCGTAATCTACTCCGTCTAAATGGATTTTGCATATCACCAACTGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGTTTAAGAGAGCGTAAGCAATGCCAGCCGCCACTCAACTGGGAAATACGTAAACGAGTTGCTATAGGGGCTGCACAGGGACTTGAATATTTACATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTACTAGATGATGAATTTGAGGCTGTTGTTGGAGATTTTGGATTGGCTAAACTCATGAACTACAAGGATACTCATGTCACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCAGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAATCTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGATGACATCATGTTGCTTGATTGGGTAAAAGGACTTCTGAATGATAAGAAACTGGAAACGTTGGTCGATCCCAATCTCGAAGGCAATTACGTAGAGGAAGAACTGGAGCAGGTAATTCAAGTTGCACTGCTTTGCACGCAAAGCTCCCCTGTGGAGCGACCAAAGATGTCGGAGGTGTTGCAAATGCTGGAAGGAGATGGTTTGGCTGAAAGATGGGAAGAATGGCAGAAAGAAGAGAGCTCACGCCGAAACTTCAATAATATGGTTCATTCTTCCAACCACCGGAATAGAACTCCCCAGTTTATTGATTCCACTTCTCATATTGCTCCTGATGTGTTGTCTGGTCCAAGATAG 1935 42.48 MICGEMRSNEMGRATLMFSAFSPFLRLILAMAFVLRVSANGEGDALNAFKLSLVDPNNVLQSWNTILMNPCTWFHVTCDEKESVIRVDLGNANLSGKLVPQLDQLTNLRYLELYSNNISGTIPERFGNLKNLESLDLYSNSLTGPIPDTLGKLTKLSTLRLNNNSLSGTIPMSLTTVPLQLLFSVDDSDISTQFCFRDLSNNLLTGDIPVNGSFSLFTPISFANNLLHISPSAPPPPTRDTPRTSSGDGANGVIVGAIVAAAALLVVVPATALNLWRRKTQQDHFFDVAAEEDPEINLGQLKKYSLGELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEQPAEVGELQFQTEVEMISMAVHRNLLRLNGFCISPTERLLVYPYMANGSLASCLRERKQCQPPLNWEIRKRVAIGAAQGLEYLHNHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKSDVFGYGVMLLELVTGQKAFDLARLAKDDDIMLLDWVKGLLNDKKLETLVDPNLEGNYVEEELEQVIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEESSRRNFNNMVHSSNHRNRTPQFIDSTSHIAPDVLSGPR 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28430394 28451743 - ClCG09G015090.2 Cla09g01478 280898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01478 644 PANTHER BNAA08G11770D PROTEIN 22 644 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cla09g01478 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Cla09g01478 644 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 22 644 - -
Cla09g01478 644 Pfam Leucine rich repeat 106 166 IPR001611 GO:0005515
Cla09g01478 644 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
Cla09g01478 644 Gene3D Ribonuclease Inhibitor 39 233 IPR032675 -
Cla09g01478 644 Pfam Protein kinase domain 317 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01478 644 MobiDBLite consensus disorder prediction 612 634 - -
Cla09g01478 644 SUPERFAMILY Protein kinase-like (PK-like) 298 591 IPR011009 -
Cla09g01478 644 ProSiteProfiles Protein kinase domain profile. 316 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01478 644 Gene3D Phosphorylase Kinase; domain 1 285 392 - -
Cla09g01478 644 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Cla09g01478 644 SUPERFAMILY L domain-like 41 227 - -
Cla09g01478 644 SMART serkin_6 316 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01478 644 Gene3D Transferase(Phosphotransferase) domain 1 393 610 - -
Cla09g01478 644 MobiDBLite consensus disorder prediction 609 644 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01478 Cla-Chr9:28430394 Cla10g00875 Cla-Chr10:20028784 0 dispersed
Cla09g01478 Cla-Chr9:28430394 Cla05g02357 Cla-Chr5:35159817 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80812 PF00069 Pkinase 4.70E-45 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01478 K13416 - csv:101216386 1006.13