Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01494 ATGAGCGGACGAATCGTGAGCGATGAAGGAATGGGACAAGCAGAGCAGAGAAACGAAGCGTTGAACATTGCATCACCCTCAAAGGTGGGTGTGCCGCCGAAGAAGAACGTGTGGGAAGAGTTTAATTCTGTGGTGAAAGAGACGTTTTTCTCTGATCAGCCTCTTCGTCATTTCAAAGACCAACCTATGCATAAGAAGGTTGCTCTCTTTGTCCAAGGTCTCTTCCCCATATTCCAATGGGGAAGGGGATATAACTTTAGTAAGTTCAAAGGGGATCTCATTGCTGGCTTAACCATTGCTAGTCTCTGCATTCCTCAAGACATTGGATATGCCAAGCTCGCTAATTTACCTCCTGAAAATGGACTTTATAGTAGTTTTGTCCCGCCGTTGGTATACGCGGTGATGGGGAGCTCTAGGGATATTGCAATCGGCCCCGTTGCTGTGGTGTCGCTTTTGCTGGGGACCCTGCTAGGGCAGGTGTACGACCCGGTTAAAGAGGTGGAGCAATACAAACGGCTGGCTTACACCGCAACTTTCTTCGCCGGAGTAACTCAGTTGGCTCTAGGGTTCCTCCGGCTCGGATTCTTGATTGACTTTCTGTCGCACGCGGCGGTTGTCGGGTTCATGGGAGGTGCGGCCGTCACCATCGCCCTTCAGCAGCTGAAAGGTCTTCTTGGCATAGTAAACTTCACCAAGAAAACTGATATAATTTCTGTAATGCGCTCTGTTTGGAGTAATGTGCACCATGGGTGGAACTGGGAGACTATACTCATAGGCGTTTCATTTCTGGCCTTTCTTTTGGCTACAAAATACATTGGCAAGAAATACAAGAAACTGTTCTGGATTCCAGCCATTGCCCCCTTAACATCTGTTATACTTTCCACATTTTTGGTGTACATTACTCGAGCAGATAAACATGGAGTTCAGATTGTAAGACACTTAGATAAAGGAATAAATCCACCATCCCTTGATAAGATATTCTTCCATGGAGACGATCTCACCCAAGGTTTCAAGATTGGAGTGGTTGCTGGTTTGATTGGCCTAACGGAAGCAGTGGCAATTGCAAGAACATTTGCAGACCTAAAAGACTATGAGATTGACGGTAACAAAGAAATGATGGCTCTTGGAACCATGAACATTGCTGGCTCCATGACTTCTTGCTATGTAGCCACAGGATCGTTCTCTCGGTCGGCGGTGAACTACATGGCCGGCTGCAACACACCGATGTCGAACATCGTCATGGCATGCGTCGTTCTCTTGACATTAGAGCTCATCACGCCCCTTTTCAAGTACACCCCTAATGCCATTCTCGCCTCCATCATTATTTGTGCCGTCATCGGTCTCATTGACATCGATGCCGTGATTTTGCTTTGGAAGATCGACAAATTCGACTTCATTGCCTGCATGGGGGCTTTCTTCGGTGTCATCTTTGATTCCGTTGAGATTGGTCTTCTCATTGCTGTTAGTTTGTCATTGTCCAAAATTCTATTGCAAGTAACAAGACCGAGAATTGCGTTGCTTGGGAAGCTCCCAAAGATTCCTATTTTTAGAAACATTTTGCAGTACCCTGGGGCAAAGAAGATTGCAGGAGTTCTAATGGTTAGGGTTGATTCTTCAGTATACTTCTCCAATGCCAATTATGTCAAAGAAAGGATACTGAGATGGCTGGCAGATGAAACAGAGAAGCTAGAAGACCAATCTTTGCCAATCAAAGTCGTGGTCGTCGACATGTCTCCCGTATCCGATATCGACACGAGTGGCATCCATGCCTTGGAGGGTTTGCACTCTCATTTGCATAAGAAGGAAATTGCCCTTGCACTTGCAAATCCAGGCCCAGTGATCATGGAGAAGCTCTTAGCTTCAAACTTTGATAAGCTCATTGGAGAAGACAACATTTTCCTCAGTGTTAACGAAGCTATTAAGATTTATGCTCCAGATGCTGTTCTTGATCCTTAA 1956 45.86 MSGRIVSDEGMGQAEQRNEALNIASPSKVGVPPKKNVWEEFNSVVKETFFSDQPLRHFKDQPMHKKVALFVQGLFPIFQWGRGYNFSKFKGDLIAGLTIASLCIPQDIGYAKLANLPPENGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLGQVYDPVKEVEQYKRLAYTATFFAGVTQLALGFLRLGFLIDFLSHAAVVGFMGGAAVTIALQQLKGLLGIVNFTKKTDIISVMRSVWSNVHHGWNWETILIGVSFLAFLLATKYIGKKYKKLFWIPAIAPLTSVILSTFLVYITRADKHGVQIVRHLDKGINPPSLDKIFFHGDDLTQGFKIGVVAGLIGLTEAVAIARTFADLKDYEIDGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCNTPMSNIVMACVVLLTLELITPLFKYTPNAILASIIICAVIGLIDIDAVILLWKIDKFDFIACMGAFFGVIFDSVEIGLLIAVSLSLSKILLQVTRPRIALLGKLPKIPIFRNILQYPGAKKIAGVLMVRVDSSVYFSNANYVKERILRWLADETEKLEDQSLPIKVVVVDMSPVSDIDTSGIHALEGLHSHLHKKEIALALANPGPVIMEKLLASNFDKLIGEDNIFLSVNEAIKIYAPDAVLDP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28880621 28887879 + ClCG09G015220.2 Cla09g01494 280914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01494 651 PANTHER SULFATE TRANSPORTER 12 650 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla09g01494 651 PANTHER SULFATE TRANSPORTER 1.2-LIKE 12 650 - -
Cla09g01494 651 Pfam STAS domain 522 639 IPR002645 -
Cla09g01494 651 ProSiteProfiles STAS domain profile. 521 643 IPR002645 -
Cla09g01494 651 Gene3D STAS domain 516 646 IPR036513 -
Cla09g01494 651 CDD STAS_SulP_like_sulfate_transporter 522 636 - -
Cla09g01494 651 Pfam Sulfate permease family 89 469 IPR011547 GO:0016021
Cla09g01494 651 SUPERFAMILY SpoIIaa-like 526 642 IPR036513 -
Cla09g01494 651 TIGRFAM sulP: sulfate permease 76 639 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00847 Cla-Chr3:11307918 Cla09g01494 Cla-Chr9:28880621 0 dispersed
Cla09g01494 Cla-Chr9:28880621 Cla11g00117 Cla-Chr11:1459483 0 dispersed
Cla09g01494 Cla-Chr9:28880621 Cla11g01499 Cla-Chr11:28656522 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01494 K17470 - csv:101202746 1178.31