Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01506 ATGGCCACGCTGACGGTGCCCGACCAGCTTCCTCCAGTGGCCGAAGATTGCGAGCGCCTCCACAATGCATTTCAAGGTCTCTCTCTACCTAAAATCTTCCTAATCTTCTTACCTTTTTTTTGGGGGAAGAAGTGGAGTTGTTGGGGTACGGATGAGGGGGCGATTATATCCATATTGGCTCACAGAAATGCTAAACAGCGAAGTCTAATTCGACAAACCTATACCGAAACATATGGAGAGGATCTCTTGAAGTCGCTAGACAAAGAACTTTCAAGTGATTTTGAGAGAGTTGTGCTTTTATGGACACTACAACCTGCTGAACGTGATGCATTACTAGCCAATGAATCAATAAGGAAACTTACCCCAAAGCATTTTGTTATATTGGAAATAGCTTGTACTAGAACTCCACGGGATCTATTTTTAGTGAAGGAAGAATATCATGCTCGTTTCAAGCGGTCTATTGAAGAAGATGTTGCACAGCACACTACAGGTGATTTTCGAAGGCTTCTGGTTCCTCTTGTGACTGCATATCGGTATGATGGTCCTGAGGTAAATGCTACCCTAGCCACATCAGAGGCTAAGATACTTCACGAAAAAATCTCTGAGAAAGCCTACAATGATGAGGAGCTCATCAGAATTATAAGCACTAGGAGCAAGGCACAACTAAATGCTACGTTTAATCATTACAATGACCAATTTGGGAACGCTATTAACAAGGATCTAAAGACCGACCCTGATAATGAATACCTTAAACTTTTAAGATCTGCTATAAAGTGTCTAACTTGGCCTGAGAAATATTTTGAGAAAGTTCTTCGTTTGGCCATCAAAGGGCTTGGGACCGATGAAGAGGCTTTGACTAGAGTGGTAGTAACGCGAGCTGAGGTCGACATGAAACGCATTGTTGAAGAGTATTATCGGAGAAGCAGTGTTCCTTTGGACCAGGCGATAAAAGGCGATACCTCTGGGGATTATGAAGGGATGCTTCTTGCTTTGATTGGTAATGGGAGTGGTTAA 1014 42.8 MATLTVPDQLPPVAEDCERLHNAFQGLSLPKIFLIFLPFFWGKKWSCWGTDEGAIISILAHRNAKQRSLIRQTYTETYGEDLLKSLDKELSSDFERVVLLWTLQPAERDALLANESIRKLTPKHFVILEIACTRTPRDLFLVKEEYHARFKRSIEEDVAQHTTGDFRRLLVPLVTAYRYDGPEVNATLATSEAKILHEKISEKAYNDEELIRIISTRSKAQLNATFNHYNDQFGNAINKDLKTDPDNEYLKLLRSAIKCLTWPEKYFEKVLRLAIKGLGTDEEALTRVVVTRAEVDMKRIVEEYYRRSSVPLDQAIKGDTSGDYEGMLLALIGNGSG 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29333846 29336950 + ClCG09G015350.2 Cla09g01506 280926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01506 337 ProSiteProfiles Annexin repeat profile. 104 175 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 Pfam Annexin 267 331 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 Pfam Annexin 192 254 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 Pfam Annexin 48 100 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 Pfam Annexin 109 173 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 Gene3D Annexin 262 335 IPR037104 GO:0005509|GO:0005544
Cla09g01506 337 ProSiteProfiles Annexin repeat profile. 262 333 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 PRINTS Annexin family signature 113 134 IPR001464 GO:0005509|GO:0005544
Cla09g01506 337 PRINTS Annexin family signature 275 295 IPR001464 GO:0005509|GO:0005544
Cla09g01506 337 PRINTS Annexin family signature 319 332 IPR001464 GO:0005509|GO:0005544
Cla09g01506 337 PRINTS Annexin family signature 46 68 IPR001464 GO:0005509|GO:0005544
Cla09g01506 337 PRINTS Annexin family signature 86 102 IPR001464 GO:0005509|GO:0005544
Cla09g01506 337 ProSiteProfiles Annexin repeat profile. 11 103 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 ProSiteProfiles Annexin repeat profile. 187 258 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 PANTHER ANNEXIN 7 335 - -
Cla09g01506 337 SUPERFAMILY Annexin 2 334 IPR037104 GO:0005509|GO:0005544
Cla09g01506 337 PANTHER ANNEXIN D2 7 335 - -
Cla09g01506 337 PRINTS Plant annexin signature 182 202 IPR009118 -
Cla09g01506 337 PRINTS Plant annexin signature 140 154 IPR009118 -
Cla09g01506 337 PRINTS Plant annexin signature 247 265 IPR009118 -
Cla09g01506 337 ProSitePatterns Annexin repeat signature. 279 331 IPR018252 GO:0005509|GO:0005544
Cla09g01506 337 Gene3D Annexin 186 261 IPR037104 GO:0005509|GO:0005544
Cla09g01506 337 Gene3D Annexin 104 174 IPR037104 GO:0005509|GO:0005544
Cla09g01506 337 SMART annex3 204 256 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 SMART annex3 279 331 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 SMART annex3 121 173 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 SMART annex3 49 101 IPR018502 GO:0005509|GO:0005544
Cla09g01506 337 Gene3D Annexin 1 103 IPR037104 GO:0005509|GO:0005544
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01506 K17098 ANNAT; annexin D - csv:101218520 549.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02669 Cla-Chr5:37861787 Cla09g01506 Cla-Chr9:29333846 2.48E-81 dispersed
Cla05g02670 Cla-Chr5:37876542 Cla09g01506 Cla-Chr9:29333846 4.88E-52 dispersed
Cla05g02671 Cla-Chr5:37880590 Cla09g01506 Cla-Chr9:29333846 1.98E-90 dispersed
Cla05g02672 Cla-Chr5:37892873 Cla09g01506 Cla-Chr9:29333846 2.90E-102 dispersed
Cla07g00607 Cla-Chr7:11184041 Cla09g01506 Cla-Chr9:29333846 7.96E-69 dispersed
Cla07g00611 Cla-Chr7:11230985 Cla09g01506 Cla-Chr9:29333846 9.71E-18 dispersed
Cla09g01506 Cla-Chr9:29333846 Cla10g00839 Cla-Chr10:19323789 2.24E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00768 Csa07g00545 . Cme01g00246 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01506 Cam09g1655 Cec09g1662 Cco09g1712 . . Cre09g1546 . . Chy01g00259 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001965 1 3 3 2 1 2 3 2 2 2 2 2 3 2 3 3 2 4 3 2 2 2 2 2 2 2 1 3 2 1 66