Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01515 ATGGCTGACACAGCTTATATTCTTGCAGATATCGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTGCGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATTCTAAGTTTCGTATTACTTCAGAGCCTCCAGACAGACCATCGAGTGGGTCGCTATTTCTTTTTGATCGCAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAGAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGCTGGAGCTGTCGTTGAGACTGACGAGGTTTCATCAAGTTCACAAAAGAGCAGTCCTAGGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACTTTAACATCATTTTGTGAAGATGCTGATGCTGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTTGCCAAAAATGGGAAATGGTCTTCTGGTGAATAAACAAGATGCTGATCAATCAAAATTTTATTTTCCGCATTCCTCTTCCAACAATCTTGACGCTTGGTCATCAGGTCCTTCTGTGGATTATGTAACACAAGTTCAGAAAGCTGGACTTGGGAGTAACGATGGTGATACTGGTGTGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAATTCCTAGCAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAAGAGCACGCTGACCAGTATCCAGATTTGTATTCTGTTTATGACATAGATAGCAGGTTTGAGCAGAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTCTGCTCATCCTGGCATAGAGAATGAGGATATTCTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATTGTATTCAGCTATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACCATCAGCTATTCTTTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTGAAGAAAGTCGATAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGGGAAGTGGATGATTTGCACATGCATCCATCATCTGGCTTGTCCTGGACGACTGTAGAATGTGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAACTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACACTTGCAGATTTAGAAACTGAGGTTGTGATTATAGGGAAGTTTCTCGGGAACAATCATGGCACAAACTGTCATTGGTCATGTATGTTTGGGGAAGTCGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCACGCACCGCCACATAGTGTTGGGCGAGTCCCTTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCAGGCTCTGCGCAAGATGTAGATGTTACCGACATATATACTGTTGGTTCAACGAAAGAATTATGTATGCATTTGCGACTTGAGAGGTTACTCTCTCTTGGATCTTTAGATCCTTCAAATGACCTCTCTGAAGATGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCACAATAAAAGAAGAAGAAGATCTTTATGGGGAAGAGCCAAATTCCCAGAATGACCAAATTCAGCATCAAAACAAGGACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCACAAAGTAATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGACGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCTGGAGTGAGTATAAACTTTCGAGACATTAATGGATGGACTGCTTTGACAGTTGGAACCCTTATGTCATTGGATGCTGATCCTGGATTGCCTTCAGATCCTTCTCCAGAATTTCCATGGGGCAGAACACCGGCAGATCTTGCGTCTGATAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAAATCTGTATCAATGGCTGATTCCATATCAATGGGTGAGGCTGTAGAAGATGGTGTGGCAGACGTTTCAAAGAGGAAACCAGTGCATACTGTTTCTGAACGAAGGGCAACACCAGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTAAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAATGTGGAACTGATGAATTTGGATCCTCAGATGATAGTGCTCTTTCATTTGTCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCAGTCCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTACTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGGCACCAGGTGAGGAAGCAATATAAAAAGATTGTTTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGAGCAGATGCAGTTGCCAAGGATCCACCCTCCGTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCACAGTATCCCGAGGGACGAGACCAATACCGTAGGCTGCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTCATATGGCTGTTACTAGTACTTCGGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACACACTGCTGGACGACGATGCTTTGATGTCTATGACATTTGATTGA 3264 42.49 MADTAYILADIEQLLIEAKHRWLRPAEICEILRNYSKFRITSEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNAGAVVETDEVSSSSQKSSPRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADAEDTYQATSRFHSFPTLPKMGNGLLVNKQDADQSKFYFPHSSSNNLDAWSSGPSVDYVTQVQKAGLGSNDGDTGVMGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPSKLLTSNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKEHADQYPDLYSVYDIDSRFEQKSHDATFGSGHEMFSAHPGIENEDILPNLELQFKEGELYSAMRLSSENDMSKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLSWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTLADLETEVVIIGKFLGNNHGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTDIYTVGSTKELCMHLRLERLLSLGSLDPSNDLSEDALEKRNLIRELITIKEEEDLYGEEPNSQNDQIQHQNKDKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDGDGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALTVGTLMSLDADPGLPSDPSPEFPWGRTPADLASDNGHKGISGFLAEAALTSYVKSVSMADSISMGEAVEDGVADVSKRKPVHTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECGTDEFGSSDDSALSFVKARARKSGLSNSPVHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRADAVAKDPPSVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSHMAVTSTSEEIIEGDDMIDIDTLLDDDALMSMTFD 1087
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29878670 29890825 + ClCG09G015440.1 Cla09g01515 280935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01515 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 909 960 IPR027417 -
Cla09g01515 1087 SUPERFAMILY E set domains 503 587 IPR014756 -
Cla09g01515 1087 Pfam IPT/TIG domain 502 575 IPR002909 -
Cla09g01515 1087 Gene3D - 910 957 - -
Cla09g01515 1087 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 7 1087 - -
Cla09g01515 1087 MobiDBLite consensus disorder prediction 142 184 - -
Cla09g01515 1087 Gene3D Immunoglobulins 496 591 IPR013783 -
Cla09g01515 1087 Pfam IQ calmodulin-binding motif 935 954 IPR000048 GO:0005515
Cla09g01515 1087 Pfam IQ calmodulin-binding motif 911 930 IPR000048 GO:0005515
Cla09g01515 1087 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 1087 - -
Cla09g01515 1087 SMART CG_1_2 14 132 IPR005559 GO:0003677
Cla09g01515 1087 Gene3D - 627 791 IPR036770 -
Cla09g01515 1087 SUPERFAMILY Ankyrin repeat 683 789 IPR036770 -
Cla09g01515 1087 SMART iq_5 909 931 IPR000048 GO:0005515
Cla09g01515 1087 SMART iq_5 932 954 IPR000048 GO:0005515
Cla09g01515 1087 ProSiteProfiles IQ motif profile. 911 939 IPR000048 GO:0005515
Cla09g01515 1087 ProSiteProfiles IQ motif profile. 933 957 IPR000048 GO:0005515
Cla09g01515 1087 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Cla09g01515 1087 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01515 Cla-Chr9:29878670 Cla10g00851 Cla-Chr10:19518958 1.45E-61 dispersed
Cla09g01515 Cla-Chr9:29878670 Cla04g00738 Cla-Chr4:22399352 3.62E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61755 PF03859 CG-1 5.30E-51 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01515 K21596 - csv:101203707 1870.9