Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01515 ATGGCTGACACAGCTTATATTCTTGCAGATATCGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTGCGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATTCTAAGTTTCGTATTACTTCAGAGCCTCCAGACAGACCATCGAGTGGGTCGCTATTTCTTTTTGATCGCAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAGAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGCTGGAGCTGTCGTTGAGACTGACGAGGTTTCATCAAGTTCACAAAAGAGCAGTCCTAGGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACTTTAACATCATTTTGTGAAGATGCTGATGCTGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTTGCCAAAAATGGGAAATGGTCTTCTGGTGAATAAACAAGATGCTGATCAATCAAAATTTTATTTTCCGCATTCCTCTTCCAACAATCTTGACGCTTGGTCATCAGGTCCTTCTGTGGATTATGTAACACAAGTTCAGAAAGCTGGACTTGGGAGTAACGATGGTGATACTGGTGTGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAATTCCTAGCAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAAGAGCACGCTGACCAGTATCCAGATTTGTATTCTGTTTATGACATAGATAGCAGGTTTGAGCAGAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTCTGCTCATCCTGGCATAGAGAATGAGGATATTCTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATTGTATTCAGCTATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACCATCAGCTATTCTTTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTGAAGAAAGTCGATAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGGGAAGTGGATGATTTGCACATGCATCCATCATCTGGCTTGTCCTGGACGACTGTAGAATGTGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAACTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACACTTGCAGATTTAGAAACTGAGGTTGTGATTATAGGGAAGTTTCTCGGGAACAATCATGGCACAAACTGTCATTGGTCATGTATGTTTGGGGAAGTCGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCACGCACCGCCACATAGTGTTGGGCGAGTCCCTTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCAGGCTCTGCGCAAGATGTAGATGTTACCGACATATATACTGTTGGTTCAACGAAAGAATTATGTATGCATTTGCGACTTGAGAGGTTACTCTCTCTTGGATCTTTAGATCCTTCAAATGACCTCTCTGAAGATGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCACAATAAAAGAAGAAGAAGATCTTTATGGGGAAGAGCCAAATTCCCAGAATGACCAAATTCAGCATCAAAACAAGGACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCACAAAGTAATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGACGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCTGGAGTGAGTATAAACTTTCGAGACATTAATGGATGGACTGCTTTGACAGTTGGAACCCTTATGTCATTGGATGCTGATCCTGGATTGCCTTCAGATCCTTCTCCAGAATTTCCATGGGGCAGAACACCGGCAGATCTTGCGTCTGATAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAAATCTGTATCAATGGCTGATTCCATATCAATGGGTGAGGCTGTAGAAGATGGTGTGGCAGACGTTTCAAAGAGGAAACCAGTGCATACTGTTTCTGAACGAAGGGCAACACCAGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTAAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAATGTGGAACTGATGAATTTGGATCCTCAGATGATAGTGCTCTTTCATTTGTCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCAGTCCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTACTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGGCACCAGGTGAGGAAGCAATATAAAAAGATTGTTTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGAGCAGATGCAGTTGCCAAGGATCCACCCTCCGTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCACAGTATCCCGAGGGACGAGACCAATACCGTAGGCTGCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTCATATGGCTGTTACTAGTACTTCGGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACACACTGCTGGACGACGATGCTTTGATGTCTATGACATTTGATTGA 3264 42.49 MADTAYILADIEQLLIEAKHRWLRPAEICEILRNYSKFRITSEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNAGAVVETDEVSSSSQKSSPRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADAEDTYQATSRFHSFPTLPKMGNGLLVNKQDADQSKFYFPHSSSNNLDAWSSGPSVDYVTQVQKAGLGSNDGDTGVMGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPSKLLTSNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKEHADQYPDLYSVYDIDSRFEQKSHDATFGSGHEMFSAHPGIENEDILPNLELQFKEGELYSAMRLSSENDMSKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLSWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTLADLETEVVIIGKFLGNNHGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTDIYTVGSTKELCMHLRLERLLSLGSLDPSNDLSEDALEKRNLIRELITIKEEEDLYGEEPNSQNDQIQHQNKDKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDGDGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALTVGTLMSLDADPGLPSDPSPEFPWGRTPADLASDNGHKGISGFLAEAALTSYVKSVSMADSISMGEAVEDGVADVSKRKPVHTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECGTDEFGSSDDSALSFVKARARKSGLSNSPVHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRADAVAKDPPSVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSHMAVTSTSEEIIEGDDMIDIDTLLDDDALMSMTFD 1087
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29878670 29890825 + ClCG09G015440.1 Cla09g01515 280935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01515 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 909 960 IPR027417 -
Cla09g01515 1087 SUPERFAMILY E set domains 503 587 IPR014756 -
Cla09g01515 1087 Pfam IPT/TIG domain 502 575 IPR002909 -
Cla09g01515 1087 Gene3D - 910 957 - -
Cla09g01515 1087 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 7 1087 - -
Cla09g01515 1087 MobiDBLite consensus disorder prediction 142 184 - -
Cla09g01515 1087 Gene3D Immunoglobulins 496 591 IPR013783 -
Cla09g01515 1087 Pfam IQ calmodulin-binding motif 935 954 IPR000048 GO:0005515
Cla09g01515 1087 Pfam IQ calmodulin-binding motif 911 930 IPR000048 GO:0005515
Cla09g01515 1087 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 1087 - -
Cla09g01515 1087 SMART CG_1_2 14 132 IPR005559 GO:0003677
Cla09g01515 1087 Gene3D - 627 791 IPR036770 -
Cla09g01515 1087 SUPERFAMILY Ankyrin repeat 683 789 IPR036770 -
Cla09g01515 1087 SMART iq_5 909 931 IPR000048 GO:0005515
Cla09g01515 1087 SMART iq_5 932 954 IPR000048 GO:0005515
Cla09g01515 1087 ProSiteProfiles IQ motif profile. 911 939 IPR000048 GO:0005515
Cla09g01515 1087 ProSiteProfiles IQ motif profile. 933 957 IPR000048 GO:0005515
Cla09g01515 1087 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Cla09g01515 1087 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01515 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1870.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01515 Cla-Chr9:29878670 Cla10g00851 Cla-Chr10:19518958 1.45E-61 dispersed
Cla09g01515 Cla-Chr9:29878670 Cla04g00738 Cla-Chr4:22399352 3.62E-58 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01515 . 10 1087 CAMTA Transcription Factor Family AT5G64220 50.8 2.8e-270 928.7
Cla06g00202 . 6 942 CAMTA Transcription Factor Family AT1G67310 52.0 2.1e-254 875.9
Cla06g00439 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 5.1e-259 891.0
Cla06g00439 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 1.2e-192 670.6
Cla09g01515 . 10 1087 CAMTA Transcription Factor Family AT5G64220 50.8 2.8e-270 928.7
Cla06g00202 . 6 942 CAMTA Transcription Factor Family AT1G67310 52.0 2.1e-254 875.9
Cla06g00439 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 1.2e-192 670.6
Cla06g00439 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 5.1e-259 891.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61755 PF03859 CG-1 5.30E-51 No_clan Cla TF