Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01539 ATGTCCCATAATTCACTCTCTTATGAAATTCCAAAAAACATAAACCTTGTGTCCTCTTACTCCTCTAGTGACATTTCCAAAAGTATTCAACCTTATGTGATACGAAGAACCAATGAACTAAAGGCTGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCCATTTTGAGAGGCATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATTTCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCG 360 37.78 MSHNSLSYEIPKNINLVSSYSSSDISKSIQPYVIRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30466037 30466761 + ClCG09G015660.1 Cla09g01539 280959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01539 120 Gene3D - 43 120 IPR027417 -
Cla09g01539 120 PANTHER DNA HELICASE MCM9 27 120 - -
Cla09g01539 120 ProSiteProfiles MCM family domain profile. 68 120 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla09g01539 120 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 27 120 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla09g01539 120 Pfam MCM P-loop domain 70 120 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01539 Cla-Chr9:30466037 Cla10g01954 Cla-Chr10:35371168 1.49E-06 dispersed
Cla09g01539 Cla-Chr9:30466037 Cla09g01540 Cla-Chr9:30479795 5.12E-56 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01539 K10738 - csv:101205171 172.94