Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01540 ATGGACGATCCTCCTACTAGTCCCCTCAAGGCCTTCGCTACGTTTCTAATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAATTCGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTGTCTTCTCCCGTCCGACCGACTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATAAGATCATTTTGGGTGATTCGAAAGGTTCCATGAATGGAATTGAGAAATATTTCATCCATGTTCGTATTAACGTCATTGGCTCCCCGCTGGAATTGCCTGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACCGTAATCCGATCTGGGGCAATTAAGATGTATGAGGGTAAGAGGTGGTATATCTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTCGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGGTCCATTCCTCGTTCCATTCTGGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGATGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCTCCAGACCTCAAAGATGTTCGTTGTGACCTTGATCCAATGCTTATTGCTAATCATGTGAGAAGAACCAATGAACTAAAGGCTGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCCATTTTGAGAGGCATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATTTCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCGGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTGATTACCACTGGATTAGGAAGCACTAGCGCAGGACTGACTGTTGCTGCTGTTAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACAATCCATGAAGCAATGGAACAACAGACTATAAGTGTCGCAAAGGCTGGTCTTGTCACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTACGACCCTGAACAACCGCTCTCTGTCAATACAACGCTCTCCGGTCCCTTATTGAGTAGATTTGATATCGTTCTTGTGCTTTTAGATACAAAAAACCCTGAATGGGATGCAGTTGTTTCATCTCATATTCTCTCTGAGTATGAACAAGAAAACGGAAAGCATGACAATGACCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACTAAGGAAGCTGAGCAAATTATTTCAAACTATTATCAGCTTCAAAGAAGATCAGCCATGGATAATGCAGCCAGGACAACAGTACGTATGCTTGAAAGCTTGATACGGTTAGCACAAGCACATGCACGCCTTATGTTTAGAAATGAGGTTACCCGGCTCGATGCCATTACGGCTATTTTGTGCATCGAATCATCCATGACGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATATGCAAAGCAAGAAATTTTAATACTTGAGAAGCTCAAATCGATGGACGAATAG 1959 43.85 MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKHKFPVYPELETRNSIQLPSFCPSQRSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGDDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEYEQENGKHDNDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSALVDSVGNALHSNFTENPDEEYAKQEILILEKLKSMDE 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30479795 30503722 + ClCG09G015670.2 Cla09g01540 280960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01540 652 Pfam MCM OB domain 117 247 IPR033762 -
Cla09g01540 652 Gene3D - 286 616 IPR027417 -
Cla09g01540 652 SMART AAA_5 345 494 IPR003593 -
Cla09g01540 652 Gene3D - 142 198 - -
Cla09g01540 652 SUPERFAMILY Nucleic acid-binding proteins 36 254 IPR012340 -
Cla09g01540 652 PRINTS Mini-chromosome maintenance (MCM) protein family signature 480 488 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla09g01540 652 PRINTS Mini-chromosome maintenance (MCM) protein family signature 453 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla09g01540 652 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla09g01540 652 PRINTS Mini-chromosome maintenance (MCM) protein family signature 344 359 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla09g01540 652 PRINTS Mini-chromosome maintenance (MCM) protein family signature 402 416 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla09g01540 652 CDD MCM9 306 610 - -
Cla09g01540 652 PANTHER DNA HELICASE MCM9 36 650 - -
Cla09g01540 652 ProSiteProfiles MCM family domain profile. 303 506 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla09g01540 652 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 36 650 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla09g01540 652 Pfam MCM P-loop domain 305 509 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla09g01540 652 Pfam MCM AAA-lid domain 529 610 IPR041562 -
Cla09g01540 652 SMART mcm 111 612 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla09g01540 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 614 IPR027417 -
Cla09g01540 652 Gene3D - 117 247 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01540 Cla-Chr9:30479795 Cla10g01241 Cla-Chr10:27181452 1.24E-80 dispersed
Cla09g01539 Cla-Chr9:30466037 Cla09g01540 Cla-Chr9:30479795 5.12E-56 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01540 K10738 - csv:101205171 1228.77