Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01555 ATGCCGTCAAAGGGAAAGAAGAACCCAAAGACACTCTCTAGATTGTCAAACTCCAGCCACTCTCCATCTCCAGTGCCACGATTGACAATACCTCCTGCCTCCGAAGTTTGTGAAGATGAGTTTCTTTCCTCTATTGACGAAGCTTCAAGTAAATATCCTTCTTTGATTGGTAAATCTGCTTTTGTTGGGAGAGTTACTAGTGCTCCAGTTCAATCTACTGGCTGTAAAGTTTGGCTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACTCAAGGGGCTATTGTCTCGGTAGCACTTAGTTCCGAGGGAGGTAACAATTTAAAAGGCTTTCCTCTGTCCTCGTTAGCAGATGAATGCGGTAGGCACTTTGGGGTTGATCCTGGAGATTCAATAATCCATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCTTCTAGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAAACCTCTCGTTTACCTTGGGTTGCCCTGAAAGTGGTCGTGTGGTGTTTATCTTCCCTATAAAAGCCCACCTATGCAATGATCCATTAAATGATAATGTGGAATTGAAGAGCACAGAAGTTGAATCTCTGAGAATAATCAATTGTAAGGAACTATTCCTGGATCTATCTTGTTCATCCAATATATCAACAAAAGACAACCTATTCTCTTCTTCAACTATTTATTCAAGAAAGGTTCATGGTTATAGTGAAAATGGTAATTTAACATCCCCAAGCACCATGTTGTCTGTATCTCCTAAATGTGATGACGTGGTATCAAATTTACTTGTAGACAGTCCATGTGCTCGTTCACTTATTAAGGAGGCCTTAGAAGATGATAGTGTTAGAAAAACTCTACAGACGATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTTCGTGTGAGAGGTGGTAAAGGACTGTTGGGATATGATGACTCTTATAATTCTATGCACAGTGGAAGTGACGATCATTTTCAACATTTTTCATCAAATGAATATGTGGACTATGCTTTCAATATAGACCAGCTGACAAAAGTATTTATAAATGTTCAATCAACCATGGTCTCAGAGACAGTGCAAGAAAGAGTTCCATCAAATGTGGAACCTCAAAATCTAAATATTAGAGCTAAAGTAAAGCCTAAAGTTTGGAAATTGGGTGGTCTTTCAAAAGAATATGCAGTTTTGAAGGATATTATAATTGCTTCATCATTAAATAGCACTGTGTCCAGCCTCGGGTTACGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATCTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGACGTTTTTGAGATGGCAAGCCAAGCTGCACCTGCCGTGATATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAGGATGGAGGTGAAGAGCTGTCGCAAAGAATTGTTGCTACATTGCTCAATCTAATGGATGGGATCAATCGAAGTGGTGGGCCGCTTGTAATTGCTTCTACCAACAGACCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGATCGGGAAATTGAAATAGGTGTGCCATCTCCTAACCAGCGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTTGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTTGTAGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCATGAGTTTAGAGTTTCTTCTGATTGCCTTAGTTCTGGTAGATCTGTTGTAGCAGAGGAACAACACAAGTTTACTGAGGTGGATCACAAAGCCAATGTCGATCATATGATTTTGGAACCTGTTCTCTCGCAAGACGCAAGAAGTAAATCAGGCGTTTGCCCAAACCTTGCATCTTCATCAATCTCTGAGCATACTTTTACATCTGACCCGCTAACATGTGTGTCCTCAAATGAAGTGGTTGCTGATAGTGAGGATATTCTAAACTCTTCCGAAATCAAGGGTAGATTGAAGGTTGTTTTTGAAGACTTTGAGGTGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAATTGGAGGTTAAGGCTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTGATGGCACGTGCGGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGGGCTAATGCCCCATCAATTGTATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTGTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAAATGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCTAGCCCTCCTAAGGCCAGGACGTTTTGATCGATTGCTTTATGTTGGGCCCCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACTAGGAAGTTGGCGTCTCTTACTCAAGGGTGTACAGGGGCTGACATATCATTAATTTGCAGAGAATCAGCTTTATTTGCCCTCGAGGAGAACCTTGAGGCTTCAAGAATAAATATGAAACATTTAGAAACTGCAGCTAGACACGTGAAGCCATCTGAAACTGAACCTTACCGAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGTTAATGTCGTCTGTCAGCAGTCGCGATCTAACTGGTTTTCTTTTTGGCCCCTTGTAAAATCTGCTGTGTTAGTTTTCTATCGGGTTCGTCACATGCTTGAAGACTTCAAATGA 3177 41.67 MPSKGKKNPKTLSRLSNSSHSPSPVPRLTIPPASEVCEDEFLSSIDEASSKYPSLIGKSAFVGRVTSAPVQSTGCKVWLSESSMVASSFTQGAIVSVALSSEGGNNLKGFPLSSLADECGRHFGVDPGDSIIHEAGNYFALARIFSSSKELNDGVQLSTNLSFTLGCPESGRVVFIFPIKAHLCNDPLNDNVELKSTEVESLRIINCKELFLDLSCSSNISTKDNLFSSSTIYSRKVHGYSENGNLTSPSTMLSVSPKCDDVVSNLLVDSPCARSLIKEALEDDSVRKTLQTIASNELYKRCLLRGNLVTIPVLSDLCTFRVRGGKGLLGYDDSYNSMHSGSDDHFQHFSSNEYVDYAFNIDQLTKVFINVQSTMVSETVQERVPSNVEPQNLNIRAKVKPKVWKLGGLSKEYAVLKDIIIASSLNSTVSSLGLRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEMASQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHEFRVSSDCLSSGRSVVAEEQHKFTEVDHKANVDHMILEPVLSQDARSKSGVCPNLASSSISEHTFTSDPLTCVSSNEVVADSEDILNSSEIKGRLKVVFEDFEVARMKVRPSAMREVILEVPKVKWEDIGGQLEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVEMDGLHQRVGVTVIAATNRPDKIDLALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICRESALFALEENLEASRINMKHLETAARHVKPSETEPYRELSSRFQRLVCSSSQEVNVVCQQSRSNWFSFWPLVKSAVLVFYRVRHMLEDFK 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30753061 30772287 - ClCG09G015840.1 Cla09g01555 280975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01555 1058 SMART AAA_5 436 572 IPR003593 -
Cla09g01555 1058 SMART AAA_5 787 925 IPR003593 -
Cla09g01555 1058 MobiDBLite consensus disorder prediction 1 30 - -
Cla09g01555 1058 CDD AAA 434 569 - -
Cla09g01555 1058 Gene3D - 748 995 IPR027417 -
Cla09g01555 1058 CDD AAA 757 923 - -
Cla09g01555 1058 Gene3D - 570 694 - -
Cla09g01555 1058 MobiDBLite consensus disorder prediction 9 24 - -
Cla09g01555 1058 Pfam AAA+ lid domain 594 628 IPR041569 -
Cla09g01555 1058 Pfam AAA+ lid domain 945 990 IPR041569 -
Cla09g01555 1058 Coils Coil 972 992 - -
Cla09g01555 1058 Pfam ATPase family associated with various cellular activities (AAA) 440 569 IPR003959 GO:0005524|GO:0016887
Cla09g01555 1058 Pfam ATPase family associated with various cellular activities (AAA) 791 922 IPR003959 GO:0005524|GO:0016887
Cla09g01555 1058 ProSiteProfiles Plant heme peroxidase family profile. 440 768 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla09g01555 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 998 IPR027417 -
Cla09g01555 1058 PANTHER - 42 1021 - -
Cla09g01555 1058 PANTHER AAA-FAMILY ATPASE 42 1021 - -
Cla09g01555 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 625 IPR027417 -
Cla09g01555 1058 ProSitePatterns AAA-protein family signature. 893 911 IPR003960 GO:0005524|GO:0016887
Cla09g01555 1058 Gene3D - 387 569 IPR027417 -
Cla09g01555 1058 Gene3D - 924 994 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00289 Cla-Chr3:3540049 Cla09g01555 Cla-Chr9:30753061 1.95E-08 dispersed
Cla09g00577 Cla-Chr9:5386389 Cla09g01555 Cla-Chr9:30753061 4.50E-38 dispersed
Cla09g01555 Cla-Chr9:30753061 Cla10g01920 Cla-Chr10:35062114 6.91E-37 dispersed
Cla09g01555 Cla-Chr9:30753061 Cla04g00912 Cla-Chr4:24108654 8.35E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01555 - - cpep:111811570 1815.43