Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01565 ATGGATTATCTCTCCTCCAGAAAACTCCTCCCAGACGACGAAGACCTCAACAAATCCTGCAAAGACTGCCTCGATTCCCTTACCGATTCTTGCTCTTCTGATTGCATCGAAAAATGCCGAAATTTCTGCTATATCTCAATTCCAATCCCATCGCCCGTCTCAAAATCGCATCACAAACTCTCCAATTTGGTCACCTCCACCATCGCCGTTCTCTCCTTCACCTTCCTCCTCGTCCTCTGTTACGCTATATACGCCCGTTTCTACTCCGGCCGCCGCAGACGGATTCGCCGCGCCGATGCTTCACCGCCCGCGACTCATCACCAGGATGAGTTTCTCGATGAAGAACAGGGCCCTGTTTTGGATCACCCCATTTGGTACATCCGCACCGTCGGCCTCCCGCTGTCCGTCATCGAGGCTATCGCCGTCTGCAAGTTTAAATCCGGTGAGGGTTTGATCGATGGAACAGAGTGCTCTGTTTGTTTGAGCGAATTTGCAGAGGATGAAACCTTGAGGCTTTTGCCAAAGTGTAGCCACGCTTTTCATCTCCCCTGTATTGACACTTGGCTTCGATCTCACACCAATTGCCCCATGTGCCGCGCTCCTGTTGTAGCTCAGTCCACCGCCGCCGCAGCTCCGCCACCGCCGCCGCCTCCTGTGGAAACCCAGATGGGGGATTCGCAGAGGGAAGAGGGAAATGGAGCCAATTTTGGGGAAAGTTCAGCTAGAAATGAACAACAAGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATCCATTTTCCTGACGAAGGTTTAGAAGAAAGAAGTAGTGATATTCAGCCAGTGAGAAGATCTGTATCACTAGATTCTTTATCAGCTCTTAGAATCAGCTCAGTTTTTTCTGGTGTTAATGAAAAAATAGACTCTGAAGCTGAATCAATGCAGAGAAATGGGAATGGTTTGAAGAAATCATCACAAGGGAGAGGCAATTCTTCATCTGCCATGAACAGGTCAGTTTCTTGCAGTGGGAAGTTCCTAATGAGAAGCTCCACTCAGAGAAGTCATGGAACTAATCACAGTTGA 1080 48.43 MDYLSSRKLLPDDEDLNKSCKDCLDSLTDSCSSDCIEKCRNFCYISIPIPSPVSKSHHKLSNLVTSTIAVLSFTFLLVLCYAIYARFYSGRRRRIRRADASPPATHHQDEFLDEEQGPVLDHPIWYIRTVGLPLSVIEAIAVCKFKSGEGLIDGTECSVCLSEFAEDETLRLLPKCSHAFHLPCIDTWLRSHTNCPMCRAPVVAQSTAAAAPPPPPPPVETQMGDSQREEGNGANFGESSARNEQQEQEEEEEEEEEEEEEEEIHFPDEGLEERSSDIQPVRRSVSLDSLSALRISSVFSGVNEKIDSEAESMQRNGNGLKKSSQGRGNSSSAMNRSVSCSGKFLMRSSTQRSHGTNHS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31119992 31121071 - ClCG09G015940.1 Cla09g01565 280985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01565 359 MobiDBLite consensus disorder prediction 280 303 - -
Cla09g01565 359 CDD RING-H2_PA-TM-RING 156 199 - -
Cla09g01565 359 Pfam Ring finger domain 156 199 IPR001841 -
Cla09g01565 359 PANTHER RING-H2 FINGER PROTEIN ATL54 19 348 - -
Cla09g01565 359 SMART ring_2 157 198 IPR001841 -
Cla09g01565 359 Coils Coil 236 265 - -
Cla09g01565 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
Cla09g01565 359 MobiDBLite consensus disorder prediction 207 359 - -
Cla09g01565 359 SMART FANCL_C_2 153 207 - -
Cla09g01565 359 MobiDBLite consensus disorder prediction 312 359 - -
Cla09g01565 359 SUPERFAMILY RING/U-box 151 205 - -
Cla09g01565 359 MobiDBLite consensus disorder prediction 245 267 - -
Cla09g01565 359 MobiDBLite consensus disorder prediction 225 242 - -
Cla09g01565 359 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 348 IPR044675 -
Cla09g01565 359 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01565 - - - cmo:103495376 488.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00312 Cla-Chr5:2869983 Cla09g01565 Cla-Chr9:31119992 2.77E-38 dispersed
Cla08g01133 Cla-Chr8:24060947 Cla09g01565 Cla-Chr9:31119992 7.07E-49 dispersed
Cla09g01110 Cla-Chr9:12065622 Cla09g01565 Cla-Chr9:31119992 2.81E-45 dispersed
Cla09g01565 Cla-Chr9:31119992 Cla05g00454 Cla-Chr5:4088274 1.84E-25 dispersed
Cla09g01565 Cla-Chr9:31119992 Cla01g01816 Cla-Chr1:33048132 8.25E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g981 . . . . . . . . . Cmo11g01477 . . . . Sed10g1872 Cpe04g00372 Cpe15g00366 Bhi05g00901 Tan02g1189 Cmetu01g2487 Lac12g0060 Hepe02g0730 . . . . . . . . . . . . . Lsi03g00730 . . . . . Bda15g00493 . . . . . . . . Cma11g01659 Cma19g00468 Car11g01180 Car19g00344 . . . . . . . . . Cla09g01565 Cam09g1596 Cec09g1718 Cco09g1775 . . Cre09g1612 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011597 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 29