Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01575 ATGGACCACAACGGCGGCGGCGGGAATAGGGCGGAGGCGTTGCGGTGGTTGAGCATAGCGGAGAAGCTTTTGGCGGCGCGTGACTTTTATGGAACTAGGAGCTTTGCGATCCGGGCGAGGGAATCGGACCCCATAGTGTTGGAGGCGGCGGACAGGGTAATCGCCGTCGCGGATACACTGCTGGCGGCGGAGGGACGGATCAACAATCAGTATGACTGGTATAGTATTTTGCAAATTTCGCAGCCGACTCAGAGCATTGAGCTAATCGCAACTCAGTATCGGCGACTGGCGCTTCTTCTTCACCCGGAGGCTAACAGAGTCGCGTTTGCGGATCACGCTTTCAGGCTTGTTTCTGATGCATGGTGTGTGCTTTCGAATCCGTTGAGAAAAGCTTTGTATGATAACGATTACCTTATGTGCTCCAAGTTTAGCCCTGGAACCACTGGGTCGAGTCAAAAACCGAAGTCCCCGCCGCAGCAGCCTCAATTTCCGCAGCCTGTTAGAACTAGTCCTAGGAAGGAGGCTAGGATGACGGTAGAGGAGCCTCAGCATCAGGAACGGCCACCGCCACCGCCACCGCCGGAACGCCCGCAGCCGCCACAGCCGCAGCCGCAGCCACAGCCACAGCCACAGCCACCACCTCCTCAACCGTCTCCTCACCGGCCACAGCAGCAAGAGGATCCGCAGCAGCAGCAGCAGCAGCAATTTGTAAGAAAAACCCCCAAATCGATGAATGCTAAAGTAACCGTAGAAGAGAGGCCAAATGTCAGTGATGTCAATGAGTCAACTCAGGAAGCTACTCAGCAGCAAATTGATTCCAATCAGCCCTCCCGGGAGACTGAGTCTACTTTACCGACTGAGTCTACTTTACCGACTGAGTCGAGCATTCCGAGTTTCTGGACTGCTTGTCCATACTGTTATAATCTCTACGAGTACCCTAAGGGTTACGAGGATTGTGTGCTTAGGTGCCAGAATTGTGCTAAGGCATTTCAAGCATTGGTTATTCCTTCACCACCGGTAGCTGAAGGCGCTTCTACATTCTGCTGCTGGGGGTTTTTCCCACTTGGGGTTTCTCCCAATGCTAAAGGGGCAACGGGGTCTGTAGCCTGGTCGCCCTTTTCAGCTATGTTTTCCTGTCCTTTGCCTGGTAAGGAGGCAACAAAATCGGGGAAAACTAGAAATGTTAAACCCGCCAAGAAATCTACACCAAGATTTATTTGTGAAGAGGATGATATTTATGTCGAAGTCTCAGAACCGAGTGACAGTTCTGATGAAGAGTGGGGAAGGATAAGTAAGAAGAAGAAGCCTAAGAGGGGTTTGGCTAGTAGAATTGATAAGAGAGTACATTCTGAGAGCTCACTGAAAGGGAACCAAGGAAATGTAGGGAATGGAAATACAGATGAAGTTGAGAATATGAGTGGGCAGTTTGGAGAACAAAATGGGTTGGTTCGGTTCGGTTTGTCGAACTCCACAAAGGGTGAGTCCAGTAAGAAGGCTGTGGCAGCCGCAGGGGGTACTGGGAAGAAGCATAAAGGGAAAGGGCCAAAGGAGCTAGGGAAGTTAGATTTGAATGTGGAATTCAGCAATGAGGTGGAAGAACCTGCCGCAGGTGTAAGTGGAGGACATGGGGAGGATAACATTGAAGGAATTGGGTTCTTTGAGGGCCTTGATGAATTTTTGAGTAGTCTGCCAATACTTAATGCTGTGGCCGATGATAAGGTCAAAGCTAATGCAGTTGTGGTTTCTACATCGATGTGTACCTTGCCCATTTTCTCTGCTGACTCAATTATGTGTATTGGAAATAGAGTATTCATTGTTTCGAGTTACTGTGAAATATGGCTATATGGTTGA 1851 49.92 MDHNGGGGNRAEALRWLSIAEKLLAARDFYGTRSFAIRARESDPIVLEAADRVIAVADTLLAAEGRINNQYDWYSILQISQPTQSIELIATQYRRLALLLHPEANRVAFADHAFRLVSDAWCVLSNPLRKALYDNDYLMCSKFSPGTTGSSQKPKSPPQQPQFPQPVRTSPRKEARMTVEEPQHQERPPPPPPPERPQPPQPQPQPQPQPQPPPPQPSPHRPQQQEDPQQQQQQQFVRKTPKSMNAKVTVEERPNVSDVNESTQEATQQQIDSNQPSRETESTLPTESTLPTESSIPSFWTACPYCYNLYEYPKGYEDCVLRCQNCAKAFQALVIPSPPVAEGASTFCCWGFFPLGVSPNAKGATGSVAWSPFSAMFSCPLPGKEATKSGKTRNVKPAKKSTPRFICEEDDIYVEVSEPSDSSDEEWGRISKKKKPKRGLASRIDKRVHSESSLKGNQGNVGNGNTDEVENMSGQFGEQNGLVRFGLSNSTKGESSKKAVAAAGGTGKKHKGKGPKELGKLDLNVEFSNEVEEPAAGVSGGHGEDNIEGIGFFEGLDEFLSSLPILNAVADDKVKANAVVVSTSMCTLPIFSADSIMCIGNRVFIVSSYCEIWLYG 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31401189 31403300 + ClCG09G016050.1 Cla09g01575 280995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01575 616 MobiDBLite consensus disorder prediction 146 294 - -
Cla09g01575 616 SUPERFAMILY Chaperone J-domain 66 135 IPR036869 -
Cla09g01575 616 MobiDBLite consensus disorder prediction 255 294 - -
Cla09g01575 616 SMART dnaj_3 71 129 IPR001623 -
Cla09g01575 616 MobiDBLite consensus disorder prediction 489 515 - -
Cla09g01575 616 PANTHER BNAANNG15130D PROTEIN 1 576 - -
Cla09g01575 616 MobiDBLite consensus disorder prediction 223 242 - -
Cla09g01575 616 CDD DnaJ 72 126 IPR001623 -
Cla09g01575 616 MobiDBLite consensus disorder prediction 417 468 - -
Cla09g01575 616 Gene3D DnaJ domain 68 137 IPR036869 -
Cla09g01575 616 ProSiteProfiles dnaJ domain profile. 72 137 IPR001623 -
Cla09g01575 616 MobiDBLite consensus disorder prediction 453 468 - -
Cla09g01575 616 MobiDBLite consensus disorder prediction 184 222 - -
Cla09g01575 616 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 576 - -
Cla09g01575 616 Pfam DnaJ domain 72 134 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01575 - - - csv:101202983 847.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01799 Cla-Chr1:32929907 Cla09g01575 Cla-Chr9:31401189 1.09E-12 dispersed
Cla09g01575 Cla-Chr9:31401189 Cla10g00123 Cla-Chr10:1248242 3.47E-12 dispersed
Cla09g01575 Cla-Chr9:31401189 Cla11g01422 Cla-Chr11:27775757 9.62E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g955 . . . . . . . Bma12g00378 Cmo19g00493 Cmo11g01464 . . . . . Cpe04g00370 Cpe15g00374 Bhi05g00935 . . . . . . . . . . . . . . . . . . . . Cme01g00203 . . Bda15g00491 . . . . . . . . Cma11g01667 Cma19g00476 Car11g01178 Car19g00351 . . . . . . . . . Cla09g01575 Cam09g1578 Cec09g1732 Cco09g1794 . . Cre09g1623 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008143 2 1 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 1 0 34