Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01585 ATGCCGGACTCCAATTTCCAAGACACGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACAGAGTTGGCGATGAAGATGACGACATTAACGGCGGGGAAGAGTCCATAGATAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTTCTACGTATGTTTCCAGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCACCGGACAAGGTGCAAGCGGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCATCAACCAGCAGGGTACCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTGAGTAGATTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCCATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACCCATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGGCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATCTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATCCAAGAACCCTCTGCGAAAGAGACTGAACAGAGCGACGGCGAAGCTGCTAATGAATCTGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGATGATAAATAG 924 47.94 MPDSNFQDTMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPSTYVSSSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPINQQGTDGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSAKETEQSDGEAANESDAAINVDILTSNDDK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31623402 31629167 + ClCG09G016150.2 Cla09g01585 281005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01585 307 SMART tify_2 86 121 IPR010399 -
Cla09g01585 307 PANTHER GATA TRANSCRIPTION FACTOR 28 1 300 IPR045280 GO:0006355
Cla09g01585 307 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Cla09g01585 307 Pfam tify domain 90 120 IPR010399 -
Cla09g01585 307 PANTHER GATA TRANSCRIPTION FACTOR 18 1 300 - -
Cla09g01585 307 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Cla09g01585 307 MobiDBLite consensus disorder prediction 1 24 - -
Cla09g01585 307 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Cla09g01585 307 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cla09g01585 307 MobiDBLite consensus disorder prediction 1 58 - -
Cla09g01585 307 MobiDBLite consensus disorder prediction 267 307 - -
Cla09g01585 307 Pfam CCT motif 153 195 IPR010402 GO:0005515
Cla09g01585 307 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Cla09g01585 307 Gene3D - 221 286 IPR013088 GO:0006355|GO:0008270
Cla09g01585 307 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Cla09g01585 307 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Cla09g01585 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01585 - - - csv:101222542 555.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01156 Cla-Chr8:24385761 Cla09g01585 Cla-Chr9:31623402 1.18E-63 dispersed
Cla09g00147 Cla-Chr9:1505242 Cla09g01585 Cla-Chr9:31623402 2.40E-65 dispersed
Cla09g01585 Cla-Chr9:31623402 Cla04g00859 Cla-Chr4:23598226 3.57E-10 dispersed
Cla09g01585 Cla-Chr9:31623402 Cla05g02298 Cla-Chr5:34581753 2.68E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g00147 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cla08g01156 . 47 270 Tify Gene Family AT4G24470 58.3 8.8e-66 247.7
Cla09g01585 . 89 267 Tify Gene Family AT4G24470 59.7 3.7e-48 189.1
Cla09g00147 . 1 280 Tify Gene Family AT1G51600 57.0 1.2e-80 297.0
Cla09g01585 . 86 303 Tify Gene Family AT1G51600 54.4 6.9e-52 201.4
Cla08g01156 . 376 551 Tify Gene Family AT1G51600 59.0 7.6e-51 198.0
Cla08g01156 . 47 270 Tify Gene Family AT4G24470 58.3 8.8e-66 247.7
Cla09g01585 . 89 267 Tify Gene Family AT4G24470 59.7 3.7e-48 189.1
Cla09g00147 . 1 280 Tify Gene Family AT1G51600 57.0 1.2e-80 297.0
Cla09g01585 . 86 303 Tify Gene Family AT1G51600 54.4 6.9e-52 201.4
Cla08g01156 . 376 551 Tify Gene Family AT1G51600 59.0 7.6e-51 198.0
Cla09g00147 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61758 PF06203 CCT 1.60E-15 CL0281 Cla TF