Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01585 ATGCCGGACTCCAATTTCCAAGACACGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACAGAGTTGGCGATGAAGATGACGACATTAACGGCGGGGAAGAGTCCATAGATAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTTCTACGTATGTTTCCAGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCACCGGACAAGGTGCAAGCGGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCATCAACCAGCAGGGTACCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTGAGTAGATTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCCATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACCCATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGGCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATCTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATCCAAGAACCCTCTGCGAAAGAGACTGAACAGAGCGACGGCGAAGCTGCTAATGAATCTGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGATGATAAATAG 924 47.94 MPDSNFQDTMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPSTYVSSSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPINQQGTDGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSAKETEQSDGEAANESDAAINVDILTSNDDK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31623402 31629167 + ClCG09G016150.2 Cla09g01585 281005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01585 307 SMART tify_2 86 121 IPR010399 -
Cla09g01585 307 PANTHER GATA TRANSCRIPTION FACTOR 28 1 300 IPR045280 GO:0006355
Cla09g01585 307 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Cla09g01585 307 Pfam tify domain 90 120 IPR010399 -
Cla09g01585 307 PANTHER GATA TRANSCRIPTION FACTOR 18 1 300 - -
Cla09g01585 307 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Cla09g01585 307 MobiDBLite consensus disorder prediction 1 24 - -
Cla09g01585 307 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Cla09g01585 307 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cla09g01585 307 MobiDBLite consensus disorder prediction 1 58 - -
Cla09g01585 307 MobiDBLite consensus disorder prediction 267 307 - -
Cla09g01585 307 Pfam CCT motif 153 195 IPR010402 GO:0005515
Cla09g01585 307 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Cla09g01585 307 Gene3D - 221 286 IPR013088 GO:0006355|GO:0008270
Cla09g01585 307 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Cla09g01585 307 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Cla09g01585 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01156 Cla-Chr8:24385761 Cla09g01585 Cla-Chr9:31623402 1.18E-63 dispersed
Cla09g00147 Cla-Chr9:1505242 Cla09g01585 Cla-Chr9:31623402 2.40E-65 dispersed
Cla09g01585 Cla-Chr9:31623402 Cla04g00859 Cla-Chr4:23598226 3.57E-10 dispersed
Cla09g01585 Cla-Chr9:31623402 Cla05g02298 Cla-Chr5:34581753 2.68E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61758 PF06203 CCT 1.60E-15 CL0281 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01585 - - csv:101222542 555.058