Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01607 ATGGGCTTTTCAATTCTCCGAACTTCCCCTCCTCTCTCTTCCTCCCGAGCTTTTCTCTGCAACCCCACACCCTTCCCTGCTTTTCCCATTCTTCCCCTTCCTCTCCACTCTTCGCCCCATTCATTGCTCTTCAAAACCCACTTCCAATCATCTTCTTCCTCGCTCATTCGTACTTCTTTCCCAATTTCTGCAACTCCATTCTGTGGGGCTTTTGCTCTGAGACCCCGTGCCTTCCGTCGGGGCCGCGTTTTTGCCATGTCTTCGCCTAATTCAGTCCAGAAATCGGAGGAGGAGTGGCGCGCCATCCTCTCGCCGGAGCAGTTTCGAATTCTCCGGCAAAAAGGAACAGAGTATCCAGGAACTGGTACATATGACAAGTTCTATGGCGAGGGAGTTTATCACTGTGCGGGATGTGGGGCACCCCTTTATAGGTCAAACACAAAATTTAACTCCGGTTGTGGTTGGCCAGCATTCTTCGACGGTATTCCTGGAGCCATTAAACGCACTCCTGACCCTGATGGGATGAGGACTGAAATCACATGTGCTGCTTGTGATGGTCATCTGGGTCATCCTTTCTGGGGTCTCCGCTTATTCCAATTTCCAACTCAAATTCCCATTCTATCTTCCCAATTTCTCTCGCTGCATTACAAGTTCTCCCAATGTCAGCGTATTTCTTTCAAATCAAAATCCCACAAAACTTTGGAACGCAATATGTTGGAGCCTGTTAGTTGCTGCCAGAGCTCCCAGTCCCAGATTTATAGTGCAGTTAAACAGAAGAATCCCTTGAGGGCCTACTCTCATACTGTTCATCAACTTTGTGGACCTTCCTTCAACTTACAATATTCACACTCGAAGAAAGTAGCCTTTCCATCATGCACCTTAAATTGCTGGAGGAATGATTATTCTTTAGTCCCTGTACTTTTTCACAATGGTGCTACTACACTAACATTCAAAGTAGTTGAACAGAATGGGTACAATTGGTCAAATCATAGGCCTAAACAGAGGGAAAGATTGAGAATGCGTGCAGCTCTTGATGTTGCAGCTGCTGTTGACGTCATCAATGATTTAGGATTGGATACATTGACATTCCTAGCTGTGACTGTCATAGTTGTCCCTCTATTTAGGAGAATTAAGGCTAGCCCTATACTTGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGCGTGATTAGAAATATTATAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCAAGGTTTGCTTTTGGCATGGGTTTGACACAGGTCATATTATCTACTATCGCTTTCACAGCATTTGAACTTCCCCCAAATGGGGCTATTGGAACAAGAATTTTGGAGTTCCTTTTTCACGCCAAATCTGACTTGGTTAACATCAGAAGCGTTGATGAAGCTATTGTGATTGGTGCTGCCCTTTCTCTTTCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTTGCGACAAGATTTGGCTCAGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCTTGGTCATACTTCCAGTTCTTGAGAGCCAGAATTTGGGCTCAGAAAGTATCTGGCCAATGCTCGCACAAGAAAGTTTGAAGGCTTTAGGTGGACTGGGTCTGCTGTCCCTTGGGGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTGGCGGAAGCAAGAAGCTCAGAGGCTTTTGTGGCCCTTTGCCTGCTGACTGTTGCTGGCACTTCACTAATAACTCAGAAATTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCAATATTAGCAGAAACTAATTTCCGGACGCAGATTGAAGCAGACATTCGGCCATTTAGGGGCTTGCTCCTTGGGTTATTCTTTGTTACCACAGGGACCTCCATTGATATACAGCTCCTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCCCGTGTGGGCCTCACTACTCAAGAAAGTGTAAGAATAGGCTTTCTTCTATCTCAAGGTGGCGAGTTCGGATTTGTAGTGCTTGGAGTGCTTCCACTCGAGTTAAACAAGCTGCTCATCATTATTGTTGTCTTGTCAATGGCTCTAACCCCCTTGCTTAATGAAGCTGGACGAAAGGCATCTGAATTCATCAGCGAAAAGTACAAGACAGAGGATAAAGCTGCAGATACAGTGAATTTTGACGCTACTGAACCTGTTGTCATTGTTGGATTTGGACAAATGGGTCAGGTTCTGGCAAATTTCTTGTCTACACCTTTGGCATCTGGGATAGATGGCAATACTCCTGGATGGCCATATGTAGCATTTGACATTGATCTTTCCGTAGTGAAGACGTCTAGAAAGCTTGGGTTTCCTGTTCTCTATGGAGATGGATCCCGACCAGCTGTTTTGCAATCTGCTGGAATCTCTTCCCCAAAAGCTGTCATGGTTATGTTCACAGAGAAGAAGGCAACAATTGATGCTGTTCAAAAGCTCCGACTTGCATTCCCAGCTATCCCAATTTATGCCCGAGCCAAGGATGTGGTGCATCTATTAGATTTAAAGACCGCAGGTGCAACGGATGCTATTTTGGAAGATGCTGAGACTAGTTTACAACTTGGGTCAAAGCTTTTGAAAGGCCTCGGAGTCATGTCTGACCAAGTGTCTTTCCTCAGTCAAATGGTTCGGAACTCTATGGAAATACAAGCTCAAGATGCACTCGACAAATCCAATGAGCAAGAGTTAGAGATTATGAAACCACTGCAGATACGTGTCAAGGACTCGATCGAGTCCCCTGAGAACGAACTGTCGAGGCTGAATGGGAAAGACAGTACTCAAATCTTAAATGGAAAAAAGGTGGATCAAATGAAGCAAGATACTGTTTTCCAGAAGCCTGAAGATATAGATGGAAATGGAGTCCTATACTGTGAACTTGATACGGAGAGCAACTTTTTAGAGCAAAATGTGGTAGAGCCTCCAACCCACATAACAGCCACTGATGGTTTAGAAAAGTGA 3114 44.64 MGFSILRTSPPLSSSRAFLCNPTPFPAFPILPLPLHSSPHSLLFKTHFQSSSSSLIRTSFPISATPFCGAFALRPRAFRRGRVFAMSSPNSVQKSEEEWRAILSPEQFRILRQKGTEYPGTGTYDKFYGEGVYHCAGCGAPLYRSNTKFNSGCGWPAFFDGIPGAIKRTPDPDGMRTEITCAACDGHLGHPFWGLRLFQFPTQIPILSSQFLSLHYKFSQCQRISFKSKSHKTLERNMLEPVSCCQSSQSQIYSAVKQKNPLRAYSHTVHQLCGPSFNLQYSHSKKVAFPSCTLNCWRNDYSLVPVLFHNGATTLTFKVVEQNGYNWSNHRPKQRERLRMRAALDVAAAVDVINDLGLDTLTFLAVTVIVVPLFRRIKASPILGFFFAGIVLNQFGVIRNIIDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPPNGAIGTRILEFLFHAKSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGSESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDIQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVVLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLASGIDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSIESPENELSRLNGKDSTQILNGKKVDQMKQDTVFQKPEDIDGNGVLYCELDTESNFLEQNVVEPPTHITATDGLEK 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32211546 32227717 - ClCG09G016370.2 Cla09g01607 281027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01607 1037 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 96 217 IPR002579 GO:0033743
Cla09g01607 1037 Pfam SelR domain 98 192 IPR002579 GO:0033743
Cla09g01607 1037 Pfam TrkA-N domain 773 896 IPR003148 GO:0006813
Cla09g01607 1037 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 321 982 - -
Cla09g01607 1037 ProSiteProfiles RCK N-terminal domain profile. 772 904 IPR003148 GO:0006813
Cla09g01607 1037 SUPERFAMILY Mss4-like 92 192 IPR011057 -
Cla09g01607 1037 Gene3D Peptide methionine sulfoxide reductase. 80 196 - -
Cla09g01607 1037 Gene3D - 772 942 - -
Cla09g01607 1037 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 321 982 - -
Cla09g01607 1037 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 772 910 IPR036291 -
Cla09g01607 1037 Pfam Sodium/hydrogen exchanger family 363 741 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla09g01607 1037 Gene3D - 355 749 IPR038770 -
Cla09g01607 1037 Coils Coil 929 949 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00595 Cla-Chr5:5455934 Cla09g01607 Cla-Chr9:32211546 1.18E-11 dispersed
Cla08g01666 Cla-Chr8:29306965 Cla09g01607 Cla-Chr9:32211546 7.62E-07 dispersed
Cla09g01390 Cla-Chr9:25310637 Cla09g01607 Cla-Chr9:32211546 6.66E-06 dispersed
Cla09g01607 Cla-Chr9:32211546 Cla11g01675 Cla-Chr11:30363196 5.37E-23 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01607 - - csv:101209266 1368.99