Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01617 ATGGCGTCTGCTGTTTTAGCAAATCACGAACCCAGTTGGCCAACGAGCAACAAACGCAACGGCAGTGGAGGAGTTGGAGGAGGAGCGTTTATGGCGAGAGTTCCGTTCTCAAACCCTAAATCTAAACCTAATATGAAAAAGAGGAAAACTAATGGTGAAATTAACAACTTCCATCAGATGGGTGAAGAAATGGGCAACGTAACAACTCTATCTCCTTCGGATAACGGATCTTTCATCGATCGTTACAATGGGTCTTCGAACTTCGAGTACAACCAATATGTGAGTTTCAATATAACTTCATGTTCTGGGAGGGATTTGTTTGAGCTGAAGAAACGGTTGCTGGGGGAGCTTGAACAAGTTAGACGAATCAAAAATCGTATTGAATCTGGGGACATTGGTTCTGGACCTAATTATTTCAAGAAATCTTCCAAGACCAAGGGATTGAACAAGCGGCCGAAGATGCCATCTAATTTTGGCAGAGATTTGCAGGTTACGAATTCCTTTGAAGTTGGGAATCTTATGAAGACTTGCGCTCAAATCTTGAACAAATTGATGAAGCAGAAATATGGGTTGATCTTCAACAAGCCAGTGGATGTGGTTGGGTTGGGTCTTCATGACTATTATGATATTATTAAGCATCCTATGGATCTAGGGACCGTGAAATCTAAACTGGCTAAGAATTTATACGACTCGCCTTTGGATTTTGCTGATGATGTCAGGCTAACTTTTAACAATGCCATGATGTACAATCCCAAGGGTCACGAAGTTCATGTATTGGCTGAACAGTGGTTAGTGAAATTTGAGGAAATGTTTCTTCCTGTTAATCTGAAGCTGGGTGCACTGAAGCAGCCAGATCCGTATGAAGAGGAATTGCAAGCCAGTTCTTGGAATCGTGTTGAGGAGGTGGAGAAGGTGAATTTCAACTCTAATGGGAACAAATCGGAAGAAGTAAGAGTGCCATCGAGCTCATCAAAGCCGCCTTCAGTTCAATCACCAGTGAGAACCCCATCACCGGTGAGGGTACCACAAGTGAAGCCAGTAAGGCAGCCAAAACCGAAGGCAAAGGATCCCAACAAAAGAGATATGAGTTTGGAGGAGAAACACAGATTGGGAATCGGATTGCAGGGCTTGCCTCCTGAAAAGATGGATCAGGTGGTACAGATTGTGAAGAAGAGAAGTGGACATTTGAGACAGGATGGGGATGAGATTGAGCTTGACATTGAAGCAGTCGATACCGAGACCCTTTGGGAACTCGACCGGCTGGTGACGAATTGGAAGAAAATGATGAGCAAAGTCAAGCGGCAAGCTCTCATTAATGACAATGCAAATGCAGATTTGAATAAAGAGAATAATGAGATAATATCATCTGCAAATGAGATGAATGAGGTTAAAACAGAGGCGAAGAAGCTTAGAAAAGGGGATGTGGCTGAGGAAGATGTGGACATTGGAGATGAGTTGATACCAATGGGTGGTTTCCCTCCTGTTGAAATTGAAAGAGATGCAGCTGCTCATGCTAGTAGTAGTTCTGATAGCTCTAGTAGTTCAGGGAGTGATGATCCATCCTCTTCAAGTGGTTCCGATTCAGAAGGTAGCTCCTCGGACAGTGATTCAGATGATGTGAAATGTGAAGATTTGGGGCTACTGATGAAAAGAAGAGGGTTTTGGAACGTTTGCTGGCCATTGCTATTGATTGAATGGATATGTGGGGGAACTTCCATGTGGGAGAGATGA 1731 43.5 MASAVLANHEPSWPTSNKRNGSGGVGGGAFMARVPFSNPKSKPNMKKRKTNGEINNFHQMGEEMGNVTTLSPSDNGSFIDRYNGSSNFEYNQYVSFNITSCSGRDLFELKKRLLGELEQVRRIKNRIESGDIGSGPNYFKKSSKTKGLNKRPKMPSNFGRDLQVTNSFEVGNLMKTCAQILNKLMKQKYGLIFNKPVDVVGLGLHDYYDIIKHPMDLGTVKSKLAKNLYDSPLDFADDVRLTFNNAMMYNPKGHEVHVLAEQWLVKFEEMFLPVNLKLGALKQPDPYEEELQASSWNRVEEVEKVNFNSNGNKSEEVRVPSSSSKPPSVQSPVRTPSPVRVPQVKPVRQPKPKAKDPNKRDMSLEEKHRLGIGLQGLPPEKMDQVVQIVKKRSGHLRQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKVKRQALINDNANADLNKENNEIISSANEMNEVKTEAKKLRKGDVAEEDVDIGDELIPMGGFPPVEIERDAAAHASSSSDSSSSSGSDDPSSSSGSDSEGSSSDSDSDDVKCEDLGLLMKRRGFWNVCWPLLLIEWICGGTSMWER 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32364199 32366855 + ClCG09G016470.1 Cla09g01617 281037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01617 576 MobiDBLite consensus disorder prediction 134 156 - -
Cla09g01617 576 MobiDBLite consensus disorder prediction 504 531 - -
Cla09g01617 576 Gene3D - 159 277 IPR036427 GO:0005515
Cla09g01617 576 SMART bromo_6 166 276 IPR001487 GO:0005515
Cla09g01617 576 PRINTS Bromodomain signature 220 238 IPR001487 GO:0005515
Cla09g01617 576 PRINTS Bromodomain signature 204 220 IPR001487 GO:0005515
Cla09g01617 576 PRINTS Bromodomain signature 188 201 IPR001487 GO:0005515
Cla09g01617 576 PRINTS Bromodomain signature 238 257 IPR001487 GO:0005515
Cla09g01617 576 ProSiteProfiles NET domain profile. 352 433 IPR027353 -
Cla09g01617 576 PANTHER OSJNBA0053K19.4 PROTEIN 75 541 - -
Cla09g01617 576 SUPERFAMILY Bromodomain 168 271 IPR036427 GO:0005515
Cla09g01617 576 Pfam Bromodomain 177 261 IPR001487 GO:0005515
Cla09g01617 576 MobiDBLite consensus disorder prediction 498 540 - -
Cla09g01617 576 Gene3D - 355 432 IPR038336 -
Cla09g01617 576 Pfam Bromodomain extra-terminal - transcription regulation 362 423 IPR027353 -
Cla09g01617 576 MobiDBLite consensus disorder prediction 349 364 - -
Cla09g01617 576 MobiDBLite consensus disorder prediction 307 337 - -
Cla09g01617 576 PANTHER TRANSCRIPTION FACTOR GTE2 75 541 - -
Cla09g01617 576 MobiDBLite consensus disorder prediction 1 49 - -
Cla09g01617 576 MobiDBLite consensus disorder prediction 307 364 - -
Cla09g01617 576 Coils Coil 439 466 - -
Cla09g01617 576 ProSiteProfiles Bromodomain profile. 185 257 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01617 - - - csv:101209352 855.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla09g01617 Cla10g00935 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01617 Cla-Chr9:32364199 Cla10g00935 Cla-Chr10:22129447 0 dispersed
Cla09g01617 Cla-Chr9:32364199 Cla09g01060 Cla-Chr9:11229252 6.95E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80