Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01707 ATGGCCCAGCCTTCCAACGGTGCTGATCTCAATCCCCAGGCCCCTCACCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCATCAACAGCAGATGATGATGTATCCTCCTCAGCATTACATGGCGTATTCTCACCATCCTTATCAACAGCAGCAACAGCAACAACAGCAGCCGTCGCAGCAGCAGCAGCAGCAAGCTCAGTCGCAGCGACCTCGCAGACAAGGGTCAACGGACGAGGTTAAAACGCTTTGGATTGGTGACCTTCAGCCTTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTACGGATTTGTTGAGTTCTATTCGCATGCAACGGCCGATAAAGTTTTGCAGAATTATAATGGTGCTATAATGCCTAACACAGAGCTGCCTTTCCGTCTCAATTGGGCAACTTTTAGTGCAAATGATAGGCGACCAGACACTGGTTCTGACCTATCGATATTTGTTGGTGATTTGGCTGCCGATGTGACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAGATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGCTTTGTCAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAACGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAGGCATCTGGATATCAACAAGGTTATTCTTCACAAGCTTTGGTACTGGCTGGTGGACATGCAAATGGCATGGCCGTTCAGGGTTCACAATCAGATGGCGAGTCAAACAACACGACTATATTTGTTGGCGGCCTTGATTCTGATGTTAGTGATGAAGATCTCAAGCAACCTTTCTCTAAATTTGGTGATGTTGTATCTGTGAAAATTCCTATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGACGTTATGGCGGGCAAGGCTACGGTGGATATGGTGGTGGCTACTACTCCGTACCACAGCATCAGGACACAAACATGCATGCCACAGCTGCTGCAGTTAATGGATCATCTTGA 1308 46.33 MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMAYSHHPYQQQQQQQQQPSQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGYGGGYYSVPQHQDTNMHATAAAVNGSS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34204193 34214269 + ClCG09G017440.2 Cla09g01707 281127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01707 435 SUPERFAMILY RNA-binding domain, RBD 174 284 IPR035979 GO:0003676
Cla09g01707 435 CDD RRM3_NGR1_NAM8_like 309 380 - -
Cla09g01707 435 MobiDBLite consensus disorder prediction 1 25 - -
Cla09g01707 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 433 - -
Cla09g01707 435 MobiDBLite consensus disorder prediction 64 97 - -
Cla09g01707 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
Cla09g01707 435 CDD RRM2_SECp43_like 191 270 - -
Cla09g01707 435 Gene3D - 191 268 IPR012677 -
Cla09g01707 435 CDD RRM1_SECp43_like 100 180 - -
Cla09g01707 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 382 IPR000504 GO:0003723
Cla09g01707 435 SUPERFAMILY RNA-binding domain, RBD 63 182 IPR035979 GO:0003676
Cla09g01707 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 264 IPR000504 GO:0003723
Cla09g01707 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 375 IPR000504 GO:0003723
Cla09g01707 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 170 IPR000504 GO:0003723
Cla09g01707 435 SUPERFAMILY RNA-binding domain, RBD 302 412 IPR035979 GO:0003676
Cla09g01707 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723
Cla09g01707 435 SMART rrm1_1 311 378 IPR000504 GO:0003723
Cla09g01707 435 SMART rrm1_1 100 173 IPR000504 GO:0003723
Cla09g01707 435 SMART rrm1_1 193 267 IPR000504 GO:0003723
Cla09g01707 435 MobiDBLite consensus disorder prediction 64 91 - -
Cla09g01707 435 Gene3D - 57 190 IPR012677 -
Cla09g01707 435 Gene3D - 293 418 IPR012677 -
Cla09g01707 435 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 19 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01707 - - - csv:101215609 697.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01418 Cla-Chr2:28696081 Cla09g01707 Cla-Chr9:34204193 5.22E-11 dispersed
Cla05g02014 Cla-Chr5:31921158 Cla09g01707 Cla-Chr9:34204193 1.37E-06 dispersed
Cla05g02019 Cla-Chr5:31946604 Cla09g01707 Cla-Chr9:34204193 1.78E-150 dispersed
Cla08g01542 Cla-Chr8:28133336 Cla09g01707 Cla-Chr9:34204193 2.65E-18 dispersed
Cla09g01707 Cla-Chr9:34204193 Cla01g00399 Cla-Chr1:4386973 2.79E-129 dispersed
Cla08g01372 Cla-Chr8:26593268 Cla09g01707 Cla-Chr9:34204193 1.68E-07 transposed
Cla02g00613 Cla-Chr2:6731074 Cla09g01707 Cla-Chr9:34204193 1.45E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117