Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01715 ATGGCGCAACCAAATTCGGAAGAGAAAGTGAGTGAGAATCCTGAAATGGAGGTCAACAAAGAAGCTATCAATGGCGATGGCGATGATGGAAGTAGTAACAGCAGCATTGCTAATTTGGCCTTCAGATTCAATGCTCAAGCGCCTGAGTTTTTCCCTAGATCGCAAACCCAGATGCCTGTTACTGGCTATTTTCACCCCTATTTCCATTTTCTTGGTGGGGGTCCTGCTACTTCAGATTGGTTCTTTATTGGGGATCAAGAACCAGCCTATTTGATCCCCAATCCCAACATTCCGCTCCCTAATTTCTCTAAGACTGCCCGTTCTGAAGAAATTCAGCAAAAAATCATCAAACAGGTAGAATATCAGCTCAGTGACATGAGTCTTCTTGCAAATGAGACTCTTGCAAAACACATTAGTAAAGATCCTGATGGTTATGTTCCGATTTCTATTCTTTCGTCGACCAAAAAAGTGAAGTCCCTCTCAACCAACAACAATTTCATAGTTCAAGCACTCCGCTCCTCTTCAAGGCTTGTTGTCAGTGCTGATGGGAAGAAAGTTAGACGTAAGCATCCATTCACAGAGAAGGATAAAGAAGAATTGCTGGTAAGATCAGCCATTGCCCGCTCAGTTGTTGTTGAGAATTTGCCCGAAAATCACTCGCATCACAACCTGGAGAAAATATTTAGTGTGATCGGAAGGTATGTGAAGACTATCCGAATCTGCCATCCCCCAGAATCGAATCCCTGCTGCTCTAAAGGTGAATTGTTTGTCAGTAACAAGCTTCATGCACTTGTGGAGTTTGAGACAGGAGAGTTAGCTGAAAGAGCGGTGGAGCAGTTAAATGATGAGAGAAACTGGAGGAAAGGACTCCGAGTAAGGTCACTGGTGAGACGATCGGTAAGTCCGAAATCTGTTCTGAAGACTCGAAAATCAGAATTTGATAGCATTTTGGATGATGATGATTCACCATCTCCTGTATCCGTTGAAGAGTCCTCTCTGCCGAATATCAATGACCTGATTATCGATTGCAATGTACGTATTTTTGCCGAAACCTCTGTTGTCCTTTCTGAAGAGAACTCTACATCTTCTAAGAAGAGCTGGGGTCGAGGACGTGGGAAGGGGCGTGGACGAATTCATAGCCATCTCGATCGTAGCTATAGCTTGCCAGTTACGTCGTCTCCGCAGACGAGTGGCCAAGTTTTGTGTGAAGCATCTTCCAAACTCACTTCAAAGAGTCCAAGAATGCCTGATGGGACTAAAGGTTTCACCATGGGAAGAGGCAAGCCATTAAGCTCTAAACCATTATTCAATAGGCTTGTTGAGTGA 1326 44.12 MAQPNSEEKVSENPEMEVNKEAINGDGDDGSSNSSIANLAFRFNAQAPEFFPRSQTQMPVTGYFHPYFHFLGGGPATSDWFFIGDQEPAYLIPNPNIPLPNFSKTARSEEIQQKIIKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVVSADGKKVRRKHPFTEKDKEELLVRSAIARSVVVENLPENHSHHNLEKIFSVIGRYVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETGELAERAVEQLNDERNWRKGLRVRSLVRRSVSPKSVLKTRKSEFDSILDDDDSPSPVSVEESSLPNINDLIIDCNVRIFAETSVVLSEENSTSSKKSWGRGRGKGRGRIHSHLDRSYSLPVTSSPQTSGQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLSSKPLFNRLVE 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34310612 34314665 - ClCG09G017530.2 Cla09g01715 281135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01715 441 Gene3D - 107 197 IPR036388 -
Cla09g01715 441 MobiDBLite consensus disorder prediction 1 35 - -
Cla09g01715 441 SMART la 109 189 IPR006630 -
Cla09g01715 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 299 IPR000504 GO:0003723
Cla09g01715 441 Pfam La domain 115 172 IPR006630 -
Cla09g01715 441 MobiDBLite consensus disorder prediction 385 413 - -
Cla09g01715 441 PANTHER LUPUS LA PROTEIN-RELATED 6 432 IPR045180 -
Cla09g01715 441 Gene3D - 203 301 IPR012677 -
Cla09g01715 441 SUPERFAMILY RNA-binding domain, RBD 201 297 IPR035979 GO:0003676
Cla09g01715 441 ProSiteProfiles La-type HTH domain profile. 105 196 IPR006630 -
Cla09g01715 441 SUPERFAMILY Winged helix DNA-binding domain 106 192 IPR036390 -
Cla09g01715 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 282 IPR000504 GO:0003723
Cla09g01715 441 PANTHER LA-RELATED PROTEIN 6C 6 432 - -
Cla09g01715 441 MobiDBLite consensus disorder prediction 10 24 - -
Cla09g01715 441 MobiDBLite consensus disorder prediction 359 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01715 K15191 LARP7; La-related protein 7 - csv:101217948 647.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02398 Cla-Chr1:37590271 Cla09g01715 Cla-Chr9:34310612 2.49E-41 dispersed
Cla09g01411 Cla-Chr9:26315957 Cla09g01715 Cla-Chr9:34310612 6.05E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35