Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01722 ATGACGTCTTCAACCTTCAGTTCTGTTTCCTGTTTACTCAAGGATGAATCAAAGATTTTGAAGGTTAAAAAGCGAAATGAAGGGAAGGTGTTTGTTAAATGTTCAGTGAGCACTAAAGCTCAAAAGCCACAGCCGGAAGTTCGCATTGGTGTTCTTGGAGCTAGTGGTTATACTGGTTCGGAGATTGTTAGGCTTCTAGCAAATCATCCACACTTTGGCATTACTCTCATGACAGCTGATAGGAAAGCTGGTCAACCGTTTTCATCAGTATTTCCTCATCTATTCACACAAGATCTTCCAGATTTGGTAGCCATCAAAGATGCGGATTTTTCAGAGGTGGATGCCATATTTTGCTGCTTGCCACATGGAACAACGCAGGAAGTTATTAAAGCCCTTCCCAAGGAATTAAAGATTGTGGACCTTTCAGCTGCTGAATTGATGAATTGTTCTCATGAATTGTACAATTTGTACGCGATGATTCTCCAGGACTTCCGCTTGCAAGATCCATCCGAATACGAGGAGTGGTATGGCCAGGCACATAGAGCAGTGGATTTGCAGAAAGAAGCTGTGTATGGTTTGACAGAAATTTTGAGGGATAAAGTCAGAGGTGCTCGTCTTGTAGCTAATCCTGGTTGTTATCCAACATCTATTCAACTTCCTCTTGTACCACTAATAAAGGCTAATCTAATTCAACTTGGAGGCATCATTATTGATTCTAAGTCTGGTGTTAGTGGAGCTGGACGTGGTGCCAAAGAGGCAAATTTATACACCGAAATAGCTGAAGGCATTTATTCTTACGGAATTACCCGCCATCGTCATGTTCCTGAAATTGAGCAGGGACTGACTGAAGCCGCAAAGTCAAAAGTGACCGTCAGTTTTACACCACACCTAATGCCAATGATCCGAGGTATGCAATCAACTATCTATGTTCAAATGGCTCCAGGGATGACTACCGAGGATTTGCACCAACACTTAAAAGTCTCCTATAAGGAAGAAGAATTCGTACGTGTGTTGGAGAAAGGAGTTGTCCCTCGTACTCATAATGTCCGAGGGTCTAATTATTGCCACATCAACGTCTTTCCCGATCGAATTCAAGGAAGAGCAATCATTGTTTCTGTTATTGATAATCTTGTCAAGGGGGCTTCAGGTCAAGCTCTACAGAATCTCAATTTGATGATGGGATGCCATGAAACTACAGGGCTCCTTTACCAGCCCCTGTTTCCTTAA 1227 42.54 MTSSTFSSVSCLLKDESKILKVKKRNEGKVFVKCSVSTKAQKPQPEVRIGVLGASGYTGSEIVRLLANHPHFGITLMTADRKAGQPFSSVFPHLFTQDLPDLVAIKDADFSEVDAIFCCLPHGTTQEVIKALPKELKIVDLSAAELMNCSHELYNLYAMILQDFRLQDPSEYEEWYGQAHRAVDLQKEAVYGLTEILRDKVRGARLVANPGCYPTSIQLPLVPLIKANLIQLGGIIIDSKSGVSGAGRGAKEANLYTEIAEGIYSYGITRHRHVPEIEQGLTEAAKSKVTVSFTPHLMPMIRGMQSTIYVQMAPGMTTEDLHQHLKVSYKEEEFVRVLEKGVVPRTHNVRGSNYCHINVFPDRIQGRAIIVSVIDNLVKGASGQALQNLNLMMGCHETTGLLYQPLFP 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34490303 34496002 + ClCG09G017590.1 Cla09g01722 281142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01722 408 Pfam Semialdehyde dehydrogenase, NAD binding domain 48 202 IPR000534 GO:0016620|GO:0051287
Cla09g01722 408 Pfam Semialdehyde dehydrogenase, dimerisation domain 221 379 IPR012280 GO:0008652|GO:0016620|GO:0046983
Cla09g01722 408 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 232 IPR036291 -
Cla09g01722 408 Hamap N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 47 402 IPR000706 GO:0003942|GO:0006526
Cla09g01722 408 PANTHER N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED 9 408 - -
Cla09g01722 408 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 212 376 - -
Cla09g01722 408 Gene3D Dihydrodipicolinate Reductase; domain 2 216 381 - -
Cla09g01722 408 ProSitePatterns N-acetyl-gamma-glutamyl-phosphate reductase active site. 207 223 IPR023013 GO:0003942
Cla09g01722 408 PANTHER N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED 9 408 - -
Cla09g01722 408 TIGRFAM argC: N-acetyl-gamma-glutamyl-phosphate reductase 47 408 IPR000706 GO:0003942|GO:0006526
Cla09g01722 408 SMART Semialdhyde_dh_3 48 204 IPR000534 GO:0016620|GO:0051287
Cla09g01722 408 Gene3D - 49 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01722 K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] - csv:101213242 721.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g472 . . . . . . . . . . Cma02g00436 . Car02g00290 . . . . . . . . . . . . . . . . . . . . Cone3ag1119 . Lsi10g00316 . Chy11g00431 . . . . . . . . . . Cmo02g00438 . . . . . . Cpe05g01227 Bhi10g02069 . . . Hepe08g1060 . . Cla09g01722 Cam09g1816 Cec09g1878 Cco09g1970 . . Cre01g0689 . Csa02g01205 . Cme11g00503
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010951 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31