Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01724 ATGAATTATTTGAATCTACTCCTCTTCTTCCTCTTCCTTACTTCTACACTAACCAAAACGCGGTCAGATCCGCCGTCTAGCCCCGGTGGCAGCGGCGGCGGCGGCAAGCACTTCGTTCTAGTTCACGGAGCTTGCCTTGGCGCCTGGTCGTGGTACAAACTATCCACGCTGCTCCAATCGGCCGGGCACCGCGTGACAGCGCTAGACATGGCGGCGGCCGGAGTAGATCCGAGGAAGGCGGAGAATCTGAAATCGTTTAGCGAATACGTTCAGCCGTTGATGAATTTCATGGCGGAGCTGAGGGCGGAGGAGAAGGTGATTCTGGTAGGGCACAGCCAAGGCGGGCTGTGCATCTCGAAGGCGATGGAGGGCTTTCCGGAGAAAATATCTGTAGCTGTTTTTGTCGTCGCCGCCATGCCTGGCCCATCGCTAAACGTTTCCTTTCTACTTGGACAGTTTCGCAAGAGAATAGATTTTGGGCCAGACAGCCGTTATACGTTTGGTAATGGGCCTAAAAGCCCTCCAACAACTTTGACATTTGGCCCATTGTTCTTGGCATCAAAACTATTCAACAAGAGCCCCAAAGAGGATTTGACATTGGGGAAGACATTGATGAGACCAACCCATTTGTTTGAGGCACAACAATGGAACAAGGATCTAGTTTTGACTAAGGAAAGGTATGGCGCCGTCAAACGAGTTTTTGTCGTTTCGGATAAGGATAAGGTTATCCAAATGAGCTTCCAAAAATGGGTGATTCAAAAAAATCCACCTACTGCTGTTGTGGAAGTCAGGGGATCAGATCATATGGTGATGATGTCTAAGCCGTTGGATCTCTTCAATAAACTTTCCCACATTGCTCATCACTATTCTTAG 873 49.26 MNYLNLLLFFLFLTSTLTKTRSDPPSSPGGSGGGGKHFVLVHGACLGAWSWYKLSTLLQSAGHRVTALDMAAAGVDPRKAENLKSFSEYVQPLMNFMAELRAEEKVILVGHSQGGLCISKAMEGFPEKISVAVFVVAAMPGPSLNVSFLLGQFRKRIDFGPDSRYTFGNGPKSPPTTLTFGPLFLASKLFNKSPKEDLTLGKTLMRPTHLFEAQQWNKDLVLTKERYGAVKRVFVVSDKDKVIQMSFQKWVIQKNPPTAVVEVRGSDHMVMMSKPLDLFNKLSHIAHHYS 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34552886 34555879 - ClCG09G017610.1 Cla09g01724 281144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01724 290 SUPERFAMILY alpha/beta-Hydrolases 32 280 IPR029058 -
Cla09g01724 290 Gene3D alpha/beta hydrolase 35 290 IPR029058 -
Cla09g01724 290 Pfam Alpha/beta hydrolase family 38 280 IPR000073 -
Cla09g01724 290 PANTHER METHYLESTERASE FAMILY MEMBER 31 288 IPR045889 -
Cla09g01724 290 PANTHER ESTERASE PIR7A-RELATED 31 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01724 - - - csv:101207795 452.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00573 Cla-Chr2:6137759 Cla09g01724 Cla-Chr9:34552886 1.40E-90 dispersed
Cla03g00604 Cla-Chr3:7073325 Cla09g01724 Cla-Chr9:34552886 2.75E-89 transposed
Cla07g01514 Cla-Chr7:32342018 Cla09g01724 Cla-Chr9:34552886 8.28E-52 transposed
Cla08g00040 Cla-Chr8:1155396 Cla09g01724 Cla-Chr9:34552886 3.64E-49 transposed
Cla11g00454 Cla-Chr11:5165003 Cla09g01724 Cla-Chr9:34552886 1.69E-45 transposed
Cla11g00530 Cla-Chr11:6033337 Cla09g01724 Cla-Chr9:34552886 3.89E-41 transposed
Cla01g01623 Cla-Chr1:31006677 Cla09g01724 Cla-Chr9:34552886 1.48E-48 wgd
Cla02g00571 Cla-Chr2:6098481 Cla09g01724 Cla-Chr9:34552886 3.52E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g475 . . . . . . . . . . . . . . Sed08g2645 . . Bhi05g01157 Tan02g0874 Cmetu01g0432 . . . . . . . . . . . . Cone8ag1158 . . . Csa07g00789 . . . . . . . . . . . . . Cma11g01774 . . . . . . . . . . . . Cla09g01724 Cam09g1820 Cec09g1880 Cco09g1973 . . . . Csa02g01207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112