Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g01730 | ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGAAAAGCCGATAACAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATGCTTCTGAAATAAACTACCAATCAGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCCTCCAATCAGTCCATGAATTCCGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAATTAAAAAGAGTGGAGGGAAAAAGCGGAAAATTGAGTCTAGTGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGATATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTTGAGCCCGGTAATCCTTTCTGCAGAGTTGTCTTGCGACCATCCTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTCTGCCTGGAAAATAATCTAGGGGAGGGTGACGTTTGTGTGTTTGAGCTTCTTAGAATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAACCCCCAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAACTGATCAGAAATTAA | 1239 | 41.57 | MTDFSAFRTGGFKRKMPRPHFHKLVLTSTIQARKLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMATPNPASMMNPPPLRSVSHIKLIRN | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 34606667 | 34610153 | + | ClCG09G017670.1 | Cla09g01730 | 281150 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g01730 | 412 | CDD | B3_DNA | 284 | 379 | IPR003340 | GO:0003677 | |
Cla09g01730 | 412 | Gene3D | - | 263 | 383 | IPR015300 | - | |
Cla09g01730 | 412 | SUPERFAMILY | DNA-binding pseudobarrel domain | 281 | 380 | IPR015300 | - | |
Cla09g01730 | 412 | SMART | B3_2 | 21 | 113 | IPR003340 | GO:0003677 | |
Cla09g01730 | 412 | SMART | B3_2 | 286 | 381 | IPR003340 | GO:0003677 | |
Cla09g01730 | 412 | Pfam | B3 DNA binding domain | 289 | 379 | IPR003340 | GO:0003677 | |
Cla09g01730 | 412 | Pfam | B3 DNA binding domain | 23 | 110 | IPR003340 | GO:0003677 | |
Cla09g01730 | 412 | ProSiteProfiles | B3 DNA-binding domain profile. | 20 | 113 | IPR003340 | GO:0003677 | |
Cla09g01730 | 412 | PANTHER | B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN | 231 | 410 | - | - | |
Cla09g01730 | 412 | PANTHER | B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN | 16 | 167 | - | - | |
Cla09g01730 | 412 | Gene3D | - | 13 | 114 | IPR015300 | - | |
Cla09g01730 | 412 | ProSiteProfiles | B3 DNA-binding domain profile. | 286 | 381 | IPR003340 | GO:0003677 | |
Cla09g01730 | 412 | CDD | B3_DNA | 19 | 111 | IPR003340 | GO:0003677 | |
Cla09g01730 | 412 | PANTHER | B3 DOMAIN-CONTAINING | 231 | 410 | - | - | |
Cla09g01730 | 412 | PANTHER | B3 DOMAIN-CONTAINING | 16 | 167 | - | - | |
Cla09g01730 | 412 | SUPERFAMILY | DNA-binding pseudobarrel domain | 17 | 113 | IPR015300 | - | |
Cla09g01730 | 412 | MobiDBLite | consensus disorder prediction | 219 | 244 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01288 | Cla-Chr2:26875579 | Cla09g01730 | Cla-Chr9:34606667 | 7.89E-38 | dispersed | |
Cla08g01529 | Cla-Chr8:28041719 | Cla09g01730 | Cla-Chr9:34606667 | 5.25E-31 | dispersed | |
Cla09g01730 | Cla-Chr9:34606667 | Cla09g01731 | Cla-Chr9:34626671 | 8.64E-66 | tandem | |
Cla07g01647 | Cla-Chr7:33751747 | Cla09g01730 | Cla-Chr9:34606667 | 3.51E-34 | transposed | |
Cla01g01618 | Cla-Chr1:30920979 | Cla09g01730 | Cla-Chr9:34606667 | 9.27E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61762 | PF02362 | B3 | 5.70E-18 | CL0405 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g01730 | - | - | csv:101213446 | 824.313 |