Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01730 ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGAAAAGCCGATAACAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATGCTTCTGAAATAAACTACCAATCAGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCCTCCAATCAGTCCATGAATTCCGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAATTAAAAAGAGTGGAGGGAAAAAGCGGAAAATTGAGTCTAGTGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGATATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTTGAGCCCGGTAATCCTTTCTGCAGAGTTGTCTTGCGACCATCCTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTCTGCCTGGAAAATAATCTAGGGGAGGGTGACGTTTGTGTGTTTGAGCTTCTTAGAATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAACCCCCAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAACTGATCAGAAATTAA 1239 41.57 MTDFSAFRTGGFKRKMPRPHFHKLVLTSTIQARKLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMATPNPASMMNPPPLRSVSHIKLIRN 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34606667 34610153 + ClCG09G017670.1 Cla09g01730 281150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01730 412 CDD B3_DNA 284 379 IPR003340 GO:0003677
Cla09g01730 412 Gene3D - 263 383 IPR015300 -
Cla09g01730 412 SUPERFAMILY DNA-binding pseudobarrel domain 281 380 IPR015300 -
Cla09g01730 412 SMART B3_2 21 113 IPR003340 GO:0003677
Cla09g01730 412 SMART B3_2 286 381 IPR003340 GO:0003677
Cla09g01730 412 Pfam B3 DNA binding domain 289 379 IPR003340 GO:0003677
Cla09g01730 412 Pfam B3 DNA binding domain 23 110 IPR003340 GO:0003677
Cla09g01730 412 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Cla09g01730 412 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 231 410 - -
Cla09g01730 412 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 16 167 - -
Cla09g01730 412 Gene3D - 13 114 IPR015300 -
Cla09g01730 412 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677
Cla09g01730 412 CDD B3_DNA 19 111 IPR003340 GO:0003677
Cla09g01730 412 PANTHER B3 DOMAIN-CONTAINING 231 410 - -
Cla09g01730 412 PANTHER B3 DOMAIN-CONTAINING 16 167 - -
Cla09g01730 412 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Cla09g01730 412 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01288 Cla-Chr2:26875579 Cla09g01730 Cla-Chr9:34606667 7.89E-38 dispersed
Cla08g01529 Cla-Chr8:28041719 Cla09g01730 Cla-Chr9:34606667 5.25E-31 dispersed
Cla09g01730 Cla-Chr9:34606667 Cla09g01731 Cla-Chr9:34626671 8.64E-66 tandem
Cla07g01647 Cla-Chr7:33751747 Cla09g01730 Cla-Chr9:34606667 3.51E-34 transposed
Cla01g01618 Cla-Chr1:30920979 Cla09g01730 Cla-Chr9:34606667 9.27E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61762 PF02362 B3 5.70E-18 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01730 - - csv:101213446 824.313