Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01731 ATGGAGAACTCTGTTACTGCCATGCCCGAGTCAAACGAACAAGACGGAGCTCAATCGTTCAATGAAACCTCTCCAGCAAGGAGGGCTGGCCTCTTCTACAAGCTGGTAGTCCCATCCATTCTTCAAGACAAGAAGCTGATTAATTCTATGTATCTCCAGAAAATACCAAAAAAGTTTGCTAAGAAGTTTGGAGATGATCTTTCTGATCTTGTTACTCTAGTTGTTCCTAATGGTTATCGATGGGTTCTGGAATTAAAAAGACATGGCCGTAGTATGTGGTTTGAGGATGGTTGGCATGATTTTGTCAAACACCATTGCATTCAAGTTGGACAGCTCTTGGTCTTCAGATTTGAGGGAAATTCCGTTTTCAACTTTTACATGTTCAACCTAACTGCTATTCCAAATGGTCCATGCGATACTTCAAATGAACAAAACAATGGTGGACAATGTCCAGTTACACTTGGAAAAGAAGCTGAATACAAGAAATTAGTTGAAATATTTGGAACCAGTTCTCCAGATCCCTCTCCACGCCCTTCGGTCCAGAACGCTTTTTGTGAGTTTCCAGATCAACAGAAATTCAATGGAAGTTGCAATGGGACTAGCATTAAGAACTTTATGCATTGGTTTGACACAGAGAACCTGCATCCTCTAAAGGATTTTGATAATCCACTGAAGGATTTAGATAAGTTGCGTTTGCAACTACTAAATTCAAATCGAGATATTGGTATACAGTTTGACGGGGACGAGCTCGCAAAAGCTAGAGAGAATCATGACTTTCAATTCTCTGATGAAAGAGAGGAAGGAGCCAGGAAAAAGAAGTTGAAAGTTGAACCAATTGACTACTACAATGACAATGAGCCAATAGTCGAAAAAAAATGTGGAAACATCACACATAAAATTAGTAGGATGCCTTTTGGAGTTGAGGAGTTCAAGTTTGGTAATCCTTTTTGCTGGATTGTTATGAGACAATCCTATGTACGAAGAGGGTTCCATCTGCATATACCATCCAAATTTGCTGAGAAGTATCTAAAAGGGGTCTCGGGCGAGATCACACTTCAGGTTTCTAGTGGGAAGCAATGGCGTGTCCGATGCATTCGTGAAGGTCCTGGCACCAAGCTAACCAGGGGATGGGCTGACTTTGTCGTGGACAATGACTTGAAAGAAGAAGACGTTTGTGTCTTTGAACTGATCGATATAAAAGATATTGTGCTGAAAGTTACAGTATTCCGAGTCCATGACAATCCGACAAAAACTTGA 1257 40.81 MENSVTAMPESNEQDGAQSFNETSPARRAGLFYKLVVPSILQDKKLINSMYLQKIPKKFAKKFGDDLSDLVTLVVPNGYRWVLELKRHGRSMWFEDGWHDFVKHHCIQVGQLLVFRFEGNSVFNFYMFNLTAIPNGPCDTSNEQNNGGQCPVTLGKEAEYKKLVEIFGTSSPDPSPRPSVQNAFCEFPDQQKFNGSCNGTSIKNFMHWFDTENLHPLKDFDNPLKDLDKLRLQLLNSNRDIGIQFDGDELAKARENHDFQFSDEREEGARKKKLKVEPIDYYNDNEPIVEKKCGNITHKISRMPFGVEEFKFGNPFCWIVMRQSYVRRGFHLHIPSKFAEKYLKGVSGEITLQVSSGKQWRVRCIREGPGTKLTRGWADFVVDNDLKEEDVCVFELIDIKDIVLKVTVFRVHDNPTKT 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34626671 34630480 + ClCG09G017680.1 Cla09g01731 281151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01731 418 SUPERFAMILY DNA-binding pseudobarrel domain 51 129 IPR015300 -
Cla09g01731 418 SUPERFAMILY DNA-binding pseudobarrel domain 311 411 IPR015300 -
Cla09g01731 418 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-LIKE 27 412 - -
Cla09g01731 418 Gene3D - 302 414 IPR015300 -
Cla09g01731 418 Gene3D - 28 131 IPR015300 -
Cla09g01731 418 ProSiteProfiles B3 DNA-binding domain profile. 317 412 IPR003340 GO:0003677
Cla09g01731 418 ProSiteProfiles B3 DNA-binding domain profile. 55 131 IPR003340 GO:0003677
Cla09g01731 418 PANTHER B3 DOMAIN-CONTAINING 27 412 - -
Cla09g01731 418 SMART B3_2 32 131 IPR003340 GO:0003677
Cla09g01731 418 SMART B3_2 317 412 IPR003340 GO:0003677
Cla09g01731 418 CDD B3_DNA 44 129 IPR003340 GO:0003677
Cla09g01731 418 MobiDBLite consensus disorder prediction 1 21 - -
Cla09g01731 418 Pfam B3 DNA binding domain 54 125 IPR003340 GO:0003677
Cla09g01731 418 Pfam B3 DNA binding domain 320 410 IPR003340 GO:0003677
Cla09g01731 418 CDD B3_DNA 315 410 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01731 - - - csv:101213202 766.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01647 Cla-Chr7:33751747 Cla09g01731 Cla-Chr9:34626671 5.10E-07 dispersed
Cla09g01731 Cla-Chr9:34626671 Cla01g01618 Cla-Chr1:30920979 1.45E-06 dispersed
Cla09g01730 Cla-Chr9:34606667 Cla09g01731 Cla-Chr9:34626671 8.64E-66 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g506 . . . . . . Bma05g00507 . . . Cma02g00430 Cma20g00883 Car02g00285 Car20g00761 . . . . . . . . . . . . . . . . . Cone12ag1121 Cone8ag1166 Cone3ag1121 . Lsi10g00600 . Chy11g00424 . Blo04g00496 Blo13g00560 . . Bpe15g00884 . Bma03g00530 . Sed01g0327 Cmo02g00432 Cmo20g00891 . . . . . Cpe05g01232 Bhi10g02065 Tan05g1371 Cmetu11g0349 . Hepe08g1052 . . Cla09g01731 Cam09g1826 Cec09g1885 Cco09g1978 . . Cre01g0683 . Csa02g01212 . Cme11g00493
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013372 0 1 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 2 0 1 0 1 1 1 1 1 1 1 2 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61763 PF02362 B3 1.30E-20 CL0405 Cla TF