Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01736 ATGGCTGGGCTTCTGAAAAAGTTTTTCCATGAGAAGCCTTCTTCTCCTGTTAATGATGAGGATTTTACAGCTGAATATTCTTTTGCCATGGAGTATACAGGTCCGGGAATCAATTACGAGATTCCCCGTGCAGTTCCTATCAATGTTGATTATATTCCAACTGCTTCTGTTCTTTCATCATCTCAGTTCGGCGATGATTTATCATCGCTGCCTGTGATACAACCCATTATCAAGAAAATAAAGAGGGGCTCAAGTTCCAGCCCCAATTCTGTAATTTCTTCAACCTCAGAAGGCCAGGAAGATGGACCTGTTTGCCTCCATGCCAATAAGGAAGATAATGGGGAAGATGATTTTAATATCAATTCGTGTGATGGAGTTGAATCTTCGGGTGAACTTGAGAATTTCAATCAGCTGAAGGGAAGATTAGAAGGCAGGTTAGAATCACTGGAAATTAAGAATGAAGAGGATTTTCAAGGTTATACGAATTCCAGCGACTCGGAATCGGTAGAATCTGGTTTGAGCTCGTCTTCTGGGATTTTTGCTGTAAGAGAGGAAGAGGAAATTGACAATGGAACTCAGCCTCGGCATGGCAGAAGGCCATCAGCTGTTACCTTCCTTGATCCCCATTTGAGCAGCACAATTTCTGAAGAGGCAGAATCAAGTCAATTTGAGGGTGAAAGTATCCAAGAGATGCCTAGAGCTGAAAGGAAGGGGAAGAAAGGATCGTGCTACTACTGCCTCAAAGGAAACCGTTTCACTGAAAAGGAAGTATGTATAGTTTGTGGAGCCAAATATTGTTTTGACTGTATAATAAGAGCAATGGGATCAATGCCAGAAGGAAGGAAGTGTATCTCTTGCATTGGGTTTAGGATTGACGAATCAAGAAGAGGGAACCTGGGTAAAAGCTCTAAAGTGCTCAAGAGGTTGCTTGCTGATTCTGAAGTTAAGAGCACAATGTTGCGTGAGAAAGAGTGTGAAATAAATCAATTACCAGCAAGACTGGTTTACGTCAATGATGATCCTTTAAGTCGACAGGAGCTGCTTATATTGCGAAGTTGTCGAAAGCCACCAAAGAATCTAAAACCAGGACGATATTGGTATGACAAAGAATCAGGCTTCTGGGGCAAGGAAGGATGTGGGCCGAGTCAGATAGTTAGCTCCCAGCTAGAAGTTGGAGGTCGGATCAAGAGGAATGCTAGCAATGGCAATACAAACGTGTGCATTAATAATCGAGAGATCACTAGAAAAGAGCTCCGGATACTGAAGATGGCTGGAGTACCTTGTGAAGGAAGACCTTCGTTTTGGGTTAGTGCAGATGGATCCTATCAGGAAGAAGGAATGAACAATGGGGGGAAAATATGGGACAAGACTAGAACGAAGCTTGCATGTGCCCTTTTTTCTTTGCCTATTCCTTCTAATTCTGTTCATACTGGAGAGGAAATAGAGGACGGAGCTAGATCTCTTTCTTCCGAGCAGCAAACGATCCATAAACTTCTACTTGTTGGCCACAAGAAATCTGGCACGAGTACCATATTCAAGCAGTGGGGGCTGCCTCATGAAATGCCACTTTTCTTATCTAAAAAATACTTCAACAAGTCCTTCACCATTATTGTGCAAAGGGTGTTAGGTCCCTCCTTGGTTGCCAAACAAATATATAAAGTTCCTTTCTCTGATGACGAGCGTCAAACCATTAAGTTCCTAATTCAAAGGAACTTGTATTGGTATCTTAGTATACTACTGGAAGGACGGGAACGTTTTGAAGAAGAGAGCTTGATGGATGAGAAAAATAAACAACCAGTGAATGATCCATCCACCTCATCAGCATCAGGGAATGAAAATCAGTTGGAGTGTAAGACCACCTATTCCCTTGGCCCTAAACTGAAAGGATTTGCAGATTGGCTTCTTCAAGTTGTGGTGTCGGGTAACTTCGAAACCATATTCCCGGCTGCCACTCGTGTGTATGCCCAATTAGTGGAAGAGTTATTGAAGGATGAAGCCTTCCAAGCCACATACAGTAGAAGGAACGAACTAGAACTGCTCCCAAGAGTTGCTACTTATTTCCTTGATCGGGCGATTGAAATTTCAAGTATAGATTATGACCCTTCTGACAATGATATCTTGTACGCCGAGGGAATCTCCTTGTGTAACAGTCTCAGTACCATGGAGTTCAAGTTCCCCGAGTCACGACAAGACTCCATTCTCGATCCTCCTTATCAGCACGATTTGTCCATAAGGTACCAGCTGATTCGAGCCCATTCCAGTACTCTGGGAGAGAACTGCAAATGGTTGGAGATGTTTGAAGACATGAGCATAATCTTATTTTGCGTTGATTTGACCGAATATGATGAATTTGACGAGGATGATAACGGAGTTCTAATGAACCGGATGATCGCAAGCAAGGAACTCTTTAAAAGCATCGTGACACATCGAGCCTCGAGAGGAAAGAACTTCCTTCTCATACTCAACAAGTTTGATCTATTTGAAGAAAAGATCATCCAAGTCCCTCTTGCCCAATGTGAGTGGTTTGTTGACTTCAATCCAGTGATCACTGGAAGAAGTAGCAGCAGCACGAACCCGACATTGGCCCAACGAGCATTTCAGTACATAGCAGTGAAGTTCAAGAGATTGTTCTTTTCTTTGACAGACAAAAAGTTGTTTGTTTCACAAACTACAGGGATGGAGCCTGAAAATGTCAATGCAGCTCTGAGATATGCAAGAGAGATAATCAAATGGCAAGTAGACAAACCTAACATCAGCACTACTGAAATTTCAAGTACCAGTGTTGATGCAAGCAGCTTCACATAG 2805 42.64 MAGLLKKFFHEKPSSPVNDEDFTAEYSFAMEYTGPGINYEIPRAVPINVDYIPTASVLSSSQFGDDLSSLPVIQPIIKKIKRGSSSSPNSVISSTSEGQEDGPVCLHANKEDNGEDDFNINSCDGVESSGELENFNQLKGRLEGRLESLEIKNEEDFQGYTNSSDSESVESGLSSSSGIFAVREEEEIDNGTQPRHGRRPSAVTFLDPHLSSTISEEAESSQFEGESIQEMPRAERKGKKGSCYYCLKGNRFTEKEVCIVCGAKYCFDCIIRAMGSMPEGRKCISCIGFRIDESRRGNLGKSSKVLKRLLADSEVKSTMLREKECEINQLPARLVYVNDDPLSRQELLILRSCRKPPKNLKPGRYWYDKESGFWGKEGCGPSQIVSSQLEVGGRIKRNASNGNTNVCINNREITRKELRILKMAGVPCEGRPSFWVSADGSYQEEGMNNGGKIWDKTRTKLACALFSLPIPSNSVHTGEEIEDGARSLSSEQQTIHKLLLVGHKKSGTSTIFKQWGLPHEMPLFLSKKYFNKSFTIIVQRVLGPSLVAKQIYKVPFSDDERQTIKFLIQRNLYWYLSILLEGRERFEEESLMDEKNKQPVNDPSTSSASGNENQLECKTTYSLGPKLKGFADWLLQVVVSGNFETIFPAATRVYAQLVEELLKDEAFQATYSRRNELELLPRVATYFLDRAIEISSIDYDPSDNDILYAEGISLCNSLSTMEFKFPESRQDSILDPPYQHDLSIRYQLIRAHSSTLGENCKWLEMFEDMSIILFCVDLTEYDEFDEDDNGVLMNRMIASKELFKSIVTHRASRGKNFLLILNKFDLFEEKIIQVPLAQCEWFVDFNPVITGRSSSSTNPTLAQRAFQYIAVKFKRLFFSLTDKKLFVSQTTGMEPENVNAALRYAREIIKWQVDKPNISTTEISSTSVDASSFT 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34700504 34706016 - ClCG09G017730.2 Cla09g01736 281156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01736 934 Gene3D - 718 915 IPR027417 -
Cla09g01736 934 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 15 521 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla09g01736 934 MobiDBLite consensus disorder prediction 590 613 - -
Cla09g01736 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 912 IPR027417 -
Cla09g01736 934 MobiDBLite consensus disorder prediction 81 100 - -
Cla09g01736 934 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 548 932 - -
Cla09g01736 934 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 548 932 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla09g01736 934 MobiDBLite consensus disorder prediction 597 613 - -
Cla09g01736 934 PRINTS Alpha G protein (transducin) signature 497 512 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla09g01736 934 PRINTS Alpha G protein (transducin) signature 817 826 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla09g01736 934 PRINTS Alpha G protein (transducin) signature 769 797 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla09g01736 934 Gene3D - 557 710 IPR011025 GO:0007165
Cla09g01736 934 SMART galpha_1 489 923 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla09g01736 934 Coils Coil 132 152 - -
Cla09g01736 934 SUPERFAMILY Transducin (alpha subunit), insertion domain 556 709 IPR011025 GO:0007165
Cla09g01736 934 MobiDBLite consensus disorder prediction 156 176 - -
Cla09g01736 934 Pfam G-protein alpha subunit 489 909 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla09g01736 934 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 15 521 - -
Cla09g01736 934 MobiDBLite consensus disorder prediction 81 119 - -
Cla09g01736 934 ProSiteProfiles G-alpha domain profile. 494 924 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01736 - - - csv:101202880 1572.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01736 Cla-Chr9:34700504 Cla10g00122 Cla-Chr10:1232447 1.89E-06 dispersed
Cla03g00008 Cla-Chr3:126445 Cla09g01736 Cla-Chr9:34700504 3.06E-06 transposed
Cla01g01617 Cla-Chr1:30911525 Cla09g01736 Cla-Chr9:34700504 1.25E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42