Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01740 ATGCCGACCGCCCCTTCTCCTTCTCCTTCTCCTTCTCCTACCCCTTCCTCCTCCTCCTCCACCGCCGTCAATTTCCCTCCCCCCGCCTCCTTGCAGTCGGCAAAGCTCCCCGTCGATTTCAGCCCCCCTCTAATCGCCATGGTTGTCGTCATCGCTACCGCCTTCCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCATCTCATCCCTCCCATTCTCCACCTCCTCCGTCTCCACCGCCGTCGCTGGCGCCGGTGGCGGCGCCGACGTCGACGCGCCCGATCTTACCTTCCGTCTTCCTCTGGAGGCGACCTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTACAGATGGCTTCCACGTTTTCTCTCCATACGGTCTCGACGAATCCGTAATCAAGACGATTCCGCTTTCCGTTTACACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTCGAGTTTGAAGACGATGATTACGTCAGAACGCTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCTCTTTGTCGCGCGGTGGTTTTCAGGCCGGAATCTCCATTTACACCGGTTATGGCGGCTAGAATCCGGCCAAGCCTCGATGATACGATCTTACGGAGTATCGTATTAGAGCCGCTCGTGGAAGGTCCTATTCCTAATCTAGATTCTTATCACGCGACGGAATCGGAAATTACTCCTTGCGTTGATGAACCACGGAATAGCAATTCCGTGGAGGATCAAATGAACGGACAAGATTTCTTGCTGAAGCGATCGTATTCATTTGGATTCGAACGGAGCTTAGCGTCGGAGAGAATGATTCTGGAACCAGCGACCACGTCTCCTTGGAGGTACCGTCGTGGAAGCTTCTGGAGCAAACGTCCGTCGCCGTTCGGATCTCTACCGAAGGCAAGAGTGTTTTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGACGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGTGTAGGCGGAGGCTCATCGAGACGGAGTAAGTCAATGACGAGTCCGATGTTTCTCCGATCGTCGGTAACCGGCGGAGGAACAGCGGCGTTCTCGTCGAGCCGGTTGAGATGCGGAGATCCGGAGGCGTTATTATCACCGGAGAGATTCAACCAAAGATGA 1218 54.11 MPTAPSPSPSPSPTPSSSSSTAVNFPPPASLQSAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDGFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLVEGPIPNLDSYHATESEITPCVDEPRNSNSVEDQMNGQDFLLKRSYSFGFERSLASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGTAAFSSSRLRCGDPEALLSPERFNQR 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34753521 34754738 - ClCG09G017770.1 Cla09g01740 281160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01740 405 MobiDBLite consensus disorder prediction 1 24 - -
Cla09g01740 405 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Cla09g01740 405 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 376 IPR044675 -
Cla09g01740 405 SUPERFAMILY RING/U-box 147 199 - -
Cla09g01740 405 MobiDBLite consensus disorder prediction 352 377 - -
Cla09g01740 405 CDD RING-H2_PA-TM-RING 150 193 - -
Cla09g01740 405 SMART ring_2 151 192 IPR001841 -
Cla09g01740 405 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 376 - -
Cla09g01740 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
Cla09g01740 405 Pfam Ring finger domain 150 193 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01740 Cla-Chr9:34753521 Cla09g01110 Cla-Chr9:12065622 1.38E-24 dispersed
Cla09g01740 Cla-Chr9:34753521 Cla01g01816 Cla-Chr1:33048132 1.71E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01740 - K19041 csv:101206300 652.899