Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01743 ATGGGGAAAGGAGGCGGATGCGTACCTAGCAAGAACAGAGCATCCGTAGCCGTCTCCGATCCACATCCAACTCCCGATCAACCAAAATCCACTGCCGGAGAAATCTCCGGAAATCTCAGGATCTTCATCGTCTATTACTCCATGTACGGTCACGTCCATCTCTTGGCGAAGATGATGAAGAAAGGAGTCGATTCTGTAGACGGCGTCGAAGGTGTTCTGTTTAAGGTGCCGGAGACGCTGCCGTTGGAGACGCTGGAGCAGATGAGAGTTCCGCCGAAGGACGACGGCGTGCCGGTGATTTCCGTGGAGGAGATGGTGGAGGCGGACGGATTCTTGTTTGGATTTCCGACGAGGTATGGATCCATGGCGGCGCAGATGAAGTCGTTTTTTGATTCGACGATTGATCTTTGGGAGGATCAGAGGCTGGCCGGAATTCCTGCCGGATTCTTTGTTAGTACTGGAACCCAAGGCGGCGGCCAAGAGACGACGGCCTTAACAGCAGTGACTCTTCTAGCACATCATGGAATGGTGTATGTTCCAATAGGGTACACTTTTGGAAGTGAAATGACCAATTTGGAGTCTTTAAGAGGAGGATCCCCATATGGAGCTGGAGTTTTCTCTGGTGATGGCTCAAGACCTCCATCTTCTATTGAGCTTGATCTTGCTCATTATCAAGGCAAGTACATGGCTACCATACTTAAAAAATCCCTCCCTCACCCTTAA 723 50.62 MGKGGGCVPSKNRASVAVSDPHPTPDQPKSTAGEISGNLRIFIVYYSMYGHVHLLAKMMKKGVDSVDGVEGVLFKVPETLPLETLEQMRVPPKDDGVPVISVEEMVEADGFLFGFPTRYGSMAAQMKSFFDSTIDLWEDQRLAGIPAGFFVSTGTQGGGQETTALTAVTLLAHHGMVYVPIGYTFGSEMTNLESLRGGSPYGAGVFSGDGSRPPSSIELDLAHYQGKYMATILKKSLPHP 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34768740 34772016 - ClCG09G017790.1 Cla09g01743 281163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01743 240 SUPERFAMILY Flavoproteins 40 235 IPR029039 -
Cla09g01743 240 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 31 236 - -
Cla09g01743 240 Pfam NADPH-dependent FMN reductase 54 182 IPR005025 GO:0016491
Cla09g01743 240 Gene3D - 39 236 IPR029039 -
Cla09g01743 240 MobiDBLite consensus disorder prediction 1 32 - -
Cla09g01743 240 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 40 235 IPR010089 GO:0003955|GO:0010181
Cla09g01743 240 ProSiteProfiles Flavodoxin-like domain profile. 41 229 IPR008254 GO:0010181
Cla09g01743 240 PANTHER NAD(P)H DEHYDROGENASE (QUINONE) FQR1-LIKE 2-RELATED 31 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01743 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - csv:101211762 413.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01885 Cla-Chr1:33659957 Cla09g01743 Cla-Chr9:34768740 3.29E-110 dispersed
Cla02g01918 Cla-Chr2:34320146 Cla09g01743 Cla-Chr9:34768740 1.40E-77 dispersed
Cla09g01743 Cla-Chr9:34768740 Cla10g00553 Cla-Chr10:7690477 1.01E-29 dispersed
Cla09g01743 Cla-Chr9:34768740 Cla10g00550 Cla-Chr10:7378620 4.48E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g556 . Blo15g00688 Bda06g00948 . Bpe07g00459 . . Bma12g00546 . . Cma02g00425 . Car02g00281 . . . . . . . . . . . . . . . . . . . . Cone3ag1142 . Lsi10g00335 . Chy11g00416 . . . . . . . . . . Cmo02g00426 . . . . . . Cpe05g01236 . . . . . . . Cla09g01743 Cam09g1834 Cec09g1895 Cco09g1987 . . Cre01g0676 . Csa02g01222 . Cme11g00475
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 29