Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01748 ATGTTCNCTCTCCATGGTCTTGAGAACGAGGACTCTGAAATTCAGTGGGTTCCTAAAGGTCCCGCGACTAAGGTTATTACGAAGGAATCTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTGATGGACTTGCTATCGTTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGTAACAGTTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCCCACAAATGTAATGCGATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGCAAAAGGCATCCAGATCTTGCTAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGTACTCCTCATTGTGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGAAGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCTGTCGAGAAGAATGGAGGTTGTAACCTTGTTAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACGGGTCGAGAGCACACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTATATCGGTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTGGAAAGCAAATTGAAGGAATCTATACAAGAGAAGATCTCGATATCGGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGAGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAGGAGCCCTTTGATCAATATACTAAAGATAAGGTAATGGAGATACGGATGCAAGTTATCAATCTGTCAGTTATCACTGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCAAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGACAAATATCCACCATCAGACTGTGGTACAAGTGGAGGATTGTCAGAATGCGAACGACTGACTAGCTTGAATTCCGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTACTGGCAACTTTTTTGATCTTAACTTGCCTGCTGAGGTTGTTGATAGAAACTGA 1725 42.32 MFXLHGLENEDSEIQWVPKGPATKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNSSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGGLSECERLTSLNSEENGCSSRKRARAEVVTGNFFDLNLPAEVVDRN 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34837996 34845234 + ClCG09G017840.1 Cla09g01748 281168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01748 574 ProSiteProfiles Zinc finger RING-type profile. 104 152 IPR001841 -
Cla09g01748 574 SUPERFAMILY RING/U-box 99 187 - -
Cla09g01748 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 189 IPR013083 -
Cla09g01748 574 Gene3D - 233 481 - -
Cla09g01748 574 ProSiteProfiles TRIAD supradomain profile. 100 314 IPR044066 -
Cla09g01748 574 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 4 501 - -
Cla09g01748 574 SUPERFAMILY RING/U-box 245 310 - -
Cla09g01748 574 Pfam IBR domain, a half RING-finger domain 176 237 IPR002867 -
Cla09g01748 574 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 4 501 IPR031127 GO:0004842|GO:0016567
Cla09g01748 574 SUPERFAMILY RING/U-box 176 244 - -
Cla09g01748 574 SMART ibrneu5 245 310 IPR002867 -
Cla09g01748 574 SMART ibrneu5 175 237 IPR002867 -
Cla09g01748 574 Pfam Ariadne domain 314 574 IPR045840 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01748 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 1142.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01103 Cla-Chr9:11909649 Cla09g01748 Cla-Chr9:34837996 6.21E-11 dispersed
Cla09g01748 Cla-Chr9:34837996 Cla11g00869 Cla-Chr11:13793838 1.01E-45 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01748 . 149 574 ARIADNE family AT4G34370 72.4 8.3e-184 640.2
Cla09g01748 . 43 527 ARIADNE family AT2G16090 77.4 3.8e-225 777.7
Cla09g01748 . 23 528 ARIADNE family AT3G27710 62.0 4.6e-184 641.3
Cla09g01748 . 29 507 ARIADNE family AT3G27720 54.5 5.6e-144 508.1
Cla08g00460 . 61 559 ARIADNE family AT1G05890 69.7 4.0e-213 738.0
Cla11g00869 . 62 516 ARIADNE family AT1G05890 66.9 7.1e-194 674.1
Cla08g00460 . 59 619 ARIADNE family AT1G65430 68.1 2.3e-234 808.5
Cla11g00869 . 37 568 ARIADNE family AT1G65430 70.9 1.1e-233 806.2
Cla08g00460 . 60 484 ARIADNE family AT2G31780 54.3 4.9e-139 491.5
Cla11g00869 . 49 431 ARIADNE family AT2G31780 52.8 1.5e-127 453.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46