Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01748 ATGTTCNCTCTCCATGGTCTTGAGAACGAGGACTCTGAAATTCAGTGGGTTCCTAAAGGTCCCGCGACTAAGGTTATTACGAAGGAATCTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTGATGGACTTGCTATCGTTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGTAACAGTTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCCCACAAATGTAATGCGATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGCAAAAGGCATCCAGATCTTGCTAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGTACTCCTCATTGTGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGAAGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCTGTCGAGAAGAATGGAGGTTGTAACCTTGTTAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACGGGTCGAGAGCACACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTATATCGGTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTGGAAAGCAAATTGAAGGAATCTATACAAGAGAAGATCTCGATATCGGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGAGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAGGAGCCCTTTGATCAATATACTAAAGATAAGGTAATGGAGATACGGATGCAAGTTATCAATCTGTCAGTTATCACTGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCAAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGACAAATATCCACCATCAGACTGTGGTACAAGTGGAGGATTGTCAGAATGCGAACGACTGACTAGCTTGAATTCCGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTACTGGCAACTTTTTTGATCTTAACTTGCCTGCTGAGGTTGTTGATAGAAACTGA 1725 42.32 MFXLHGLENEDSEIQWVPKGPATKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNSSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGGLSECERLTSLNSEENGCSSRKRARAEVVTGNFFDLNLPAEVVDRN 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34837996 34845234 + ClCG09G017840.1 Cla09g01748 281168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01748 574 ProSiteProfiles Zinc finger RING-type profile. 104 152 IPR001841 -
Cla09g01748 574 SUPERFAMILY RING/U-box 99 187 - -
Cla09g01748 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 189 IPR013083 -
Cla09g01748 574 Gene3D - 233 481 - -
Cla09g01748 574 ProSiteProfiles TRIAD supradomain profile. 100 314 IPR044066 -
Cla09g01748 574 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 4 501 - -
Cla09g01748 574 SUPERFAMILY RING/U-box 245 310 - -
Cla09g01748 574 Pfam IBR domain, a half RING-finger domain 176 237 IPR002867 -
Cla09g01748 574 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 4 501 IPR031127 GO:0004842|GO:0016567
Cla09g01748 574 SUPERFAMILY RING/U-box 176 244 - -
Cla09g01748 574 SMART ibrneu5 245 310 IPR002867 -
Cla09g01748 574 SMART ibrneu5 175 237 IPR002867 -
Cla09g01748 574 Pfam Ariadne domain 314 574 IPR045840 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01103 Cla-Chr9:11909649 Cla09g01748 Cla-Chr9:34837996 6.21E-11 dispersed
Cla09g01748 Cla-Chr9:34837996 Cla11g00869 Cla-Chr11:13793838 1.01E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01748 K11968 - csv:101205066 1142.87