Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01772 ATGAGTAACGCGGTTATGTTTTCAACCCTTCAAAAAAATGAGAAGATTACACACACCAATCACGCCGTCTATTTATTCCCCTTCAAATCCTGCCTTATTTTCTTCATTTTTCCTCAAACCCAATTCTTAATGGCTTCAATGGAGTTCCTAATCCTCCAATTGGGTCTTCTTTTTATGGTCTCATCTGTTAATGCCAATTATGGAGGTTGGATCAACGCTCATGCCACTTTCTATGGTGGAAGCGATGCATCTGGGACAATGGGAGGGGCTTGTGGGTATGGTAATTTGTATAGCCAAGGCTATGGAACTAACACTGCGGCGCTGAGCACAGCGTTGTTTGATAATGGACTCAGCTGTGGCGCTTGCTTTGAGCTACGGTGTGTGAACGACCCCCAATGGTGTCTTCCAGGCACCATCGTTGTCACTGCCACTAATTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCATCATTTTGACCTCTCTCAGCCTATCTTCCAACACATTGCCCAATATCGCGCCGGAATTGTCCCCGTCGCTTATCGCAGAGTAAGGTGCAGGAGAAGTGGGGGAATAAGATTCACAATCAATGGGCATTCATATTTCAATTTGGTGTTGGTGACTAACGTGGGGGGCGCCGGAGATGTACATGCCATGGCGATTAAGGGTTCGAAAACCAGATGGCAACCGATGTCTAGAAATTGGGGGCAAAATTGGCAATCCAACTCTTATCTGAACGGACAGAGTCTATCGTTTTTGGTCACAGCCAGCGACGGACGGCGAGTGCTCTCCTACAACGTGGCTCCCTCCGGCTGGTCCTTTGGACAGACTTATGTCGGCGGACAATTTCGTTATTAA 861 48.2 MSNAVMFSTLQKNEKITHTNHAVYLFPFKSCLIFFIFPQTQFLMASMEFLILQLGLLFMVSSVNANYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDVHAMAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRRVLSYNVAPSGWSFGQTYVGGQFRY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35114897 35115913 + ClCG09G018120.2 Cla09g01772 281192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01772 286 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 88 192 IPR007112 -
Cla09g01772 286 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 202 281 IPR007117 -
Cla09g01772 286 PANTHER EXPANSIN-A5 55 285 - -
Cla09g01772 286 Pfam Expansin C-terminal domain 193 270 IPR007117 -
Cla09g01772 286 Gene3D - 58 188 IPR036908 -
Cla09g01772 286 SMART dpbb_1 105 182 IPR007112 -
Cla09g01772 286 Pfam Lytic transglycolase 105 182 IPR009009 -
Cla09g01772 286 PRINTS Expansin signature 139 149 IPR002963 GO:0009664
Cla09g01772 286 PRINTS Expansin signature 167 180 IPR002963 GO:0009664
Cla09g01772 286 PRINTS Expansin signature 191 203 IPR002963 GO:0009664
Cla09g01772 286 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Cla09g01772 286 PRINTS Expansin signature 100 114 IPR002963 GO:0009664
Cla09g01772 286 PRINTS Expansin signature 127 138 IPR002963 GO:0009664
Cla09g01772 286 PRINTS Expansin signature 150 167 IPR002963 GO:0009664
Cla09g01772 286 PRINTS Expansin signature 267 283 IPR002963 GO:0009664
Cla09g01772 286 PRINTS Expansin signature 238 259 IPR002963 GO:0009664
Cla09g01772 286 Gene3D - 192 284 IPR036749 -
Cla09g01772 286 PANTHER EXPANSIN-A15 55 285 IPR002963 GO:0009664
Cla09g01772 286 SUPERFAMILY Barwin-like endoglucanases 69 210 IPR036908 -
Cla09g01772 286 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Cla09g01772 286 PRINTS Expansin/Lol pI family signature 69 84 IPR007118 GO:0005576
Cla09g01772 286 PRINTS Expansin/Lol pI family signature 175 191 IPR007118 GO:0005576
Cla09g01772 286 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Cla09g01772 286 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
Cla09g01772 286 PRINTS Expansin/Lol pI family signature 109 127 IPR007118 GO:0005576
Cla09g01772 286 SUPERFAMILY PHL pollen allergen 189 280 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01772 Cla-Chr9:35114897 Cla11g00693 Cla-Chr11:8177039 6.30E-127 dispersed
Cla04g01190 Cla-Chr4:27061578 Cla09g01772 Cla-Chr9:35114897 5.59E-88 wgd
Cla05g02431 Cla-Chr5:35815273 Cla09g01772 Cla-Chr9:35114897 5.91E-139 wgd
Cla06g01586 Cla-Chr6:29404223 Cla09g01772 Cla-Chr9:35114897 3.79E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01772 - K20628 csv:101220358 473.396