Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01783 ATGGATTTAGCCGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAATGGTGTTCTCAAGCGCCACCATCACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCTTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 906 51.32 MDLAAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35222422 35223327 + ClCG09G018230.1 Cla09g01783 281203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01783 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 282 - -
Cla09g01783 301 MobiDBLite consensus disorder prediction 137 151 - -
Cla09g01783 301 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 199 256 IPR006455 -
Cla09g01783 301 SUPERFAMILY Homeodomain-like 187 260 IPR009057 -
Cla09g01783 301 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Cla09g01783 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Cla09g01783 301 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 11 282 - -
Cla09g01783 301 MobiDBLite consensus disorder prediction 275 301 - -
Cla09g01783 301 MobiDBLite consensus disorder prediction 131 160 - -
Cla09g01783 301 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Cla09g01783 301 MobiDBLite consensus disorder prediction 7 39 - -
Cla09g01783 301 MobiDBLite consensus disorder prediction 1 39 - -
Cla09g01783 301 Gene3D - 186 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01483 Cla-Chr8:27702836 Cla09g01783 Cla-Chr9:35222422 1.63E-45 dispersed
Cla09g01783 Cla-Chr9:35222422 Cla11g00012 Cla-Chr11:134411 2.24E-48 dispersed
Cla10g01433 Cla-Chr10:29446793 Cla09g01783 Cla-Chr9:35222422 1.90E-104 wgd
Cla05g02443 Cla-Chr5:35886866 Cla09g01783 Cla-Chr9:35222422 7.56E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61767 PF04770 ZF-HD_dimer 9.90E-29 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01783 - - csv:101213548 450.669