Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01783 ATGGATTTAGCCGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAATGGTGTTCTCAAGCGCCACCATCACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCTTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 906 51.32 MDLAAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35222422 35223327 + ClCG09G018230.1 Cla09g01783 281203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01783 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 282 - -
Cla09g01783 301 MobiDBLite consensus disorder prediction 137 151 - -
Cla09g01783 301 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 199 256 IPR006455 -
Cla09g01783 301 SUPERFAMILY Homeodomain-like 187 260 IPR009057 -
Cla09g01783 301 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Cla09g01783 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Cla09g01783 301 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 11 282 - -
Cla09g01783 301 MobiDBLite consensus disorder prediction 275 301 - -
Cla09g01783 301 MobiDBLite consensus disorder prediction 131 160 - -
Cla09g01783 301 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Cla09g01783 301 MobiDBLite consensus disorder prediction 7 39 - -
Cla09g01783 301 MobiDBLite consensus disorder prediction 1 39 - -
Cla09g01783 301 Gene3D - 186 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01783 - - - csv:101213548 450.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01483 Cla-Chr8:27702836 Cla09g01783 Cla-Chr9:35222422 1.63E-45 dispersed
Cla09g01783 Cla-Chr9:35222422 Cla11g00012 Cla-Chr11:134411 2.24E-48 dispersed
Cla10g01433 Cla-Chr10:29446793 Cla09g01783 Cla-Chr9:35222422 1.90E-104 wgd
Cla05g02443 Cla-Chr5:35886866 Cla09g01783 Cla-Chr9:35222422 7.56E-57 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00822 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.9e-41 166.4
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.6e-51 200.3
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 9.0e-55 211.1
Cla01g01913 CCT,ECH 135 341 ZF-HD Transcription Factor Family AT2G18350 52.9 3.3e-50 195.7
Cla10g01433 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 4.0e-51 198.7
Cla09g01783 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.2e-51 198.4
Cla10g01433 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cla09g01783 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 3.0e-58 222.6
Cla09g01783 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.9e-51 199.5
Cla10g01433 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.3e-48 189.9
Cla09g01783 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.6e-51 200.3
Cla10g00822 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.9e-41 166.4
Cla09g01783 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.9e-51 199.5
Cla10g01433 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.3e-48 189.9
Cla01g01913 CCT,ECH 135 341 ZF-HD Transcription Factor Family AT2G18350 52.9 3.3e-50 195.7
Cla09g01783 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cla10g01433 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 4.0e-51 198.7
Cla09g01783 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.2e-51 198.4
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 9.0e-55 211.1
Cla10g01433 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cla09g01783 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 3.0e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61767 PF04770 ZF-HD_dimer 9.90E-29 No_clan Cla TF