Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01789 ATGGCGGAACCAGCAGCAGAGCCTAAGGCATTACCCGAACCCGAAAAGAAGAAGGAACAGAGCCTTCCTTTTTACCAACTCTTCTCTTTTGCAGACAAATATGACTGGTTTCTCATGATCCTCGGTAGTTTCGGCGCCATTGTCCACGGCTCTTCCATGCCTGTTTTTTTCCTTCTTTTCGGCGAAATGGTTAACGGCTTCGGCAAAAACCAATCCAATTTTCACAAAATGACAGCAGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTTTCTCATCCTACGCCGAGATCGCATGTTGGATGTACACAGGGGAGAGGCAAGTGAGTACATTGAGAAAGAAGTATTTAGAAGCTGTTTTGAAACAAGATGTTGGATTCTTCGACACTGACGCCAGAACAGGGGATGTTGTTTTCAGTGTTTCAACAGACACTCTTCTTGTACAAGATGCAATCAGCGAGAAGGTGGGGAACTTCATTCACTATCTTTCGACGTTTCTAGCTGGATTGGTTGTGGGTTTTGTGTCAGCATGGAGACTAGCTCTTCTGAGTATAGCAGTAATTCCAGGAATCGCTTTTGCTGGTGGTTTATATGCTTATACTCTCACTGGACTTACTTCAAAGAGTCGAGAATCCTATGCCAATGCTGGCATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTACGTTGGAGAAAGCAAAGCCCTGAATTCCTATTCAGATTCAATTCAAAACACATTGAAAATTGGTTACAAGGCAGGAATGGCTAAGGGGTTGGGTCTAGGTTGTACCTATGGCATTGCTTGTATGTCTTGGGCACTTGTCTTCTGGTATGCTGGAGTCTTCATCCGGAACGGCCAGTCCGATGGCGGCAAAGCCTTCACTGCTATATTCTCCGCCATCGTCGGTGGCATGAGCTTGGGGCAGTCATTTTCCAATTTGGGAGCATTCAGCAAAGGGAAAGCAGCAGGGTACAAATTGATGGAGATTATCAAACAGAGGCCTACAATTATTCAAGACCCATTAGATGGGAAATGTTTGGGTGAAGTTAATGGCAACATTGAGTTCAAAGATGTCACCTTTAGCTATCCATCCAGGCCGGACGTGATGATCTTTAGGGATTTCTCCATTTTTTTCCCTGCCGGGAAGACGGTGGCTGTCGTTGGTGGTAGCGGTTCCGGGAAAAGCACTGTTGTCTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCAGGTTTTACTAGACAATGTAGACATCAAGACACTGCAATTGAAATGGCTAAGAGATCAAATTGGTCTAGTGAATCAGGAACCGGCTCTGTTTGCAACCACCATATACGAAAACATTCTCTACGGAAAACCCGATGCGACGATGGCGGAGGTGGAAGCTGCTGCGGCTGCAGCCAACGCTCATAGCTTCATCACATTGCTCCCCAATGGCTACGACACCCAAGTGGGCGAAAGAGGATTACAACTCTCCGGTGGACAAAAACAGAGGATTGCCATAGCCAGAGCAATGTTGAAGAACCCCAAAATCCTTCTCCTCGATGAAGCCACCAGCGCACTCGATGCAGGCTCTGAGAGCATAGTTCAAGAAGCTTTAGACCGTTTAATGGTCGGAAGAACAACAGTGGTGGTTGCACATCGATTATCAACAATAAGAAATGTCGATTCAATTGCAGTTATACAACAGGGGCAGGTAGTCGAAACAGGAACTCACGAAGAACTAATCGCTAAATCCGGTGCTTATTCCTCGTTAATTCGATTCCAAGAAATGGTTCGAAATAGAGAATTCTCAAACCCATCGACCCGTCGAACACGATCTTCACGACTGAGTCATTCGTTATCGACAAAATCGTTAAGCCTCCGCTCCGGCAGCCTCAGGAATTTGAGTTATTCGTATAGCACCGGCGCCGATGGGAGAATCGAAATGGTCTCAAACGCCGAAACTGACAGGAAAAACCCAGCCCCCGATGGCTATTTCATTCGTCTTCTTAAACTGAACGGCCCCGAATGGCCGTATTCGATAATGGGCGCTGTTGGGTCTGTTCTCTCTGGTTTCATCAGTCCAACATTTGCCATTGTTATGAGTAACATGATCGAGGTCTTCTATTACAGAAATTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATTGGAATTGGGGTTTACGCAGTGGTAGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAGAATCTCACTACCAGGGTCAGAAGAATGATGCTCGCAGCGATTTTGAGGAATGAAGTGGGATGGTTCGATGAAGAAGAACACAACTCAAGTTTAGTAGCAGCAAGATTGGCTACTGATGCAGCTGATGTAAAATCCGCCATTGCTGAAAGAATATCAGTGATACTACAAAATATGACTTCACTCTTCACTTCTTTTATAGTTGCATTTATTGTTGAATGGAGAGTTTCTCTTCTCATCCTTGCAGCCTTCCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTAAAAGGATTTGCTGGGGATACTGCTAAGGCCCACGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGTAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTCTGTTCCGCCACGAGCTTCGTGTCCCACAACGACAGAGTCTCCGCCGGAGCCAAACGGCAGGTGTCCTTTTCGGTATCTCACAGCTAGCTTTATATGCCTCTGAAGCTTTAGTTCTATGGTATGGTGTCCATTTGGTCAGCAATGGTGGATCAACATTCTCCAAAGTGATCAAAGTCTTTGTTGTCTTGGTTGTTACTGCCAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCATTAGAGGTGGTGAATCAATTGGTTCTGTTTTCTCAATTCTCGATCGCCCGACGAGGATCGACCCTGATGATCCTGAGGCAGAGACTGTTGAGACGCTTCGTGGGGAAATTGAACTCCGACATGTTGACTTCGCATACCCGTCTCGACCTGATGTCATGGTGTTTAAGGATCTCAATTTGAGGATCAGGGCTGGTCAGAGCCAGGCATTGGTTGGAGCCAGTGGATCAGGGAAGAGTTCAGTGATTGCTTTGATTGAGAGATTCTACGATCCGCTTGCCGGGAAAGTTATGATCGACGGGAAGGACATTCGACGCCTGAACTTGCAATCCTTGAGGCTGAAAATTGGTTTGGTACAGCAAGAGCCAGCCTTATTTGCAGCCAGCATTTTTGACAATATTGCATATGGAAAAGATGGAGCAACAGAGGCAGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTGCATGGCTTTGTAAGTGGACTTCCTGATGGCTACAAGACACCAGTTGGGGAAAGAGGCGTTCAACTCTCTGGTGGCCAAAAACAACGCATAGCTATTGCCAGAGCTGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAAGCTACCAGTGCTCTCGACGCCGAGTCCGAGTGTGTGCTGCAAGAAGCTCTCGAAAGGCTCATGAGGGGCCGGACCACGGTGGTCGTGGCACATCGCCTGTCCACAATCAGGGGTGTGGACTGCATTGGCGTGGTCCAAGACGGTCGCATTGTCGAGCAAGGCAGCCATAATGAGCTGCTAAGCCGAGCTGAGGGGGCTTACTCAAGGCTCTTGCAGCTGCAACACCAACACATATGA 3753 46.71 MAEPAAEPKALPEPEKKKEQSLPFYQLFSFADKYDWFLMILGSFGAIVHGSSMPVFFLLFGEMVNGFGKNQSNFHKMTAEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDSIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQRPTIIQDPLDGKCLGEVNGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATMAEVEAAAAAANAHSFITLLPNGYDTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYRNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELRVPQRQSLRRSQTAGVLFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILDRPTRIDPDDPEAETVETLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPLAGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVVQDGRIVEQGSHNELLSRAEGAYSRLLQLQHQHI 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35331134 35338351 + ClCG09G018320.1 Cla09g01789 281209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01789 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Cla09g01789 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524
Cla09g01789 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla09g01789 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Cla09g01789 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla09g01789 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Cla09g01789 1250 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1248 - -
Cla09g01789 1250 SUPERFAMILY ABC transporter transmembrane region 673 993 IPR036640 GO:0005524|GO:0016021
Cla09g01789 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 600 IPR027417 -
Cla09g01789 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Cla09g01789 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Cla09g01789 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1248 IPR039421 -
Cla09g01789 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524
Cla09g01789 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Cla09g01789 1250 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524|GO:0016021
Cla09g01789 1250 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla09g01789 1250 Pfam ABC transporter transmembrane region 39 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla09g01789 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Cla09g01789 1250 Gene3D ABC transporter type 1, transmembrane domain 975 1248 IPR036640 GO:0005524|GO:0016021
Cla09g01789 1250 Gene3D ABC transporter type 1, transmembrane domain 665 974 IPR036640 GO:0005524|GO:0016021
Cla09g01789 1250 Gene3D ABC transporter type 1, transmembrane domain 26 615 IPR036640 GO:0005524|GO:0016021
Cla09g01789 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Cla09g01789 1250 SMART AAA_5 390 582 IPR003593 -
Cla09g01789 1250 SMART AAA_5 1035 1221 IPR003593 -
Cla09g01789 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Cla09g01789 1250 Gene3D - 998 1247 IPR027417 -
Cla09g01789 1250 Gene3D - 353 601 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00778 Cla-Chr2:9829442 Cla09g01789 Cla-Chr9:35331134 1.45E-89 dispersed
Cla02g01854 Cla-Chr2:33683024 Cla09g01789 Cla-Chr9:35331134 2.35E-38 dispersed
Cla05g01610 Cla-Chr5:27403937 Cla09g01789 Cla-Chr9:35331134 0 dispersed
Cla09g01104 Cla-Chr9:11940744 Cla09g01789 Cla-Chr9:35331134 0 dispersed
Cla09g01789 Cla-Chr9:35331134 Cla10g01909 Cla-Chr10:34988204 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01789 K05658 - csv:101212585 2281.14