Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01795 ATGGGTTTGGCACCTAATGATTCCAAGCTCGAGACATGGATTGAGGGGAAGTCAAAAACAGCTAGCGAGAAGAAGAAGAAGAAGGAGAATGAGTTGGAGGAGGAGACTGGATGTTGGGTTAAGTTGAAGTTCATAGGGAGTTGCATTCCTTCTAGATCAAAGGTTGATAGTTCTCTGAGTGGATCAAAGGTCGATAGCTTCATCAGTGGCACCAGTACTCATTGCGATAGTAAACCTAAACTTGACGAAAAAAGAGATATTCTGGTTACTGCATTGGGGTCATCAGCGACAACTGATAATGCTGAAAGTAGTTCGTCCACGCCCAAGCTCAGTGCAGAGCTGAAGGTTGCTTCTCGGCTTCGTAAGTTCACTTTTAATGAGCTTAAGTTAGCCACGAGAAATTTCCGACCTGAGAGCCTTCTTGGCGAGGGAGGTTTTGGTTGTGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCTGGAACTGGGCTTACAGTTGCAGTCAAGACTCTTAATCATGACGGCCTACAAGGTCACAAGGAGTGGATGGCTGAAGTTAACTTCCTTGGTGACCTCAACCATTCTAATCTTGTAAGATTGATTGGTTGCTGCATTGAAGATGATCAAAGGTTATTAGTTTATGAGTTCATGCCTCGTGGAAGTTTGGAGAATCACCTCTTCAGAAAAGGGCCCTTGCCACTTCCTTGGTCTATTAGATTGAAAATTGCGCTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTGATATATCGTGATTTTAAAACGTCTAATATTTTATTAGATGCGGACTACAATGCTAAACTCTCAGATTTTGGACTCGCAAAAGATGGTCCTGAGGGTGACAAAACTCATGTTTCAACTCGGGTTATGGGAACCTATGGTTATGCAGCTCCAGAATATGTGATGACTGGGCATTTGACATCAAAAAGCGATGTCTACAGTTTTGGAGTTGTCTTGCTTGAAATGCTAACCGGTCGAAGATCGATGGATAAAAATAGACCGAATGGGGAGCACAACCTTGTTGAATGGGCTAGACCCTTGCTTGGAGACAAGAGGAAGTTCTACCGGCTGATAGATCCTCGCCTTGAATGTCACTTCTCGATCAAAGGTGCACAAAAAGCTGCCGAGCTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGCCAGACCTATGATGAGTGAAGTTGTTGAAATTTTAAAACCTTTGCCAAACCTCAAGGACATGGCAAGTTCTTCCTATTACTTCCAAACCATGCAAACAGACCGTGCCAGGTCCAACCCCAATGCTAAAAGTGTCGTCCGGACTCAGTCGATGTTTGTGGCAAGGAATGGGCAACACATTAGAAGCTTATCAAGTCCAAATGGGCCTCATGCTTCTCCATATAATTATCCTCATCAGTCACCGAAACCTGACAGGAGATAA 1473 44.06 MGLAPNDSKLETWIEGKSKTASEKKKKKENELEEETGCWVKLKFIGSCIPSRSKVDSSLSGSKVDSFISGTSTHCDSKPKLDEKRDILVTALGSSATTDNAESSSSTPKLSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRKGPLPLPWSIRLKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPMMSEVVEILKPLPNLKDMASSSYYFQTMQTDRARSNPNAKSVVRTQSMFVARNGQHIRSLSSPNGPHASPYNYPHQSPKPDRR 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35478580 35484146 - ClCG09G018380.1 Cla09g01795 281215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01795 490 ProSiteProfiles Protein kinase domain profile. 135 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01795 490 MobiDBLite consensus disorder prediction 464 478 - -
Cla09g01795 490 Gene3D Phosphorylase Kinase; domain 1 110 220 - -
Cla09g01795 490 PANTHER OS01G0588500 PROTEIN-RELATED 66 482 - -
Cla09g01795 490 SUPERFAMILY Protein kinase-like (PK-like) 112 416 IPR011009 -
Cla09g01795 490 Pfam Protein tyrosine and serine/threonine kinase 139 416 IPR001245 GO:0004672|GO:0006468
Cla09g01795 490 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524
Cla09g01795 490 Gene3D Transferase(Phosphotransferase) domain 1 221 439 - -
Cla09g01795 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Cla09g01795 490 CDD STKc_IRAK 141 419 - -
Cla09g01795 490 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 66 482 - -
Cla09g01795 490 MobiDBLite consensus disorder prediction 12 34 - -
Cla09g01795 490 MobiDBLite consensus disorder prediction 464 490 - -
Cla09g01795 490 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01962 Cla-Chr2:34709743 Cla09g01795 Cla-Chr9:35478580 9.01E-151 dispersed
Cla04g00646 Cla-Chr4:20870732 Cla09g01795 Cla-Chr9:35478580 2.46E-65 dispersed
Cla04g00804 Cla-Chr4:23075651 Cla09g01795 Cla-Chr9:35478580 9.50E-149 dispersed
Cla05g02471 Cla-Chr5:36132739 Cla09g01795 Cla-Chr9:35478580 0 dispersed
Cla09g01197 Cla-Chr9:14876219 Cla09g01795 Cla-Chr9:35478580 5.03E-115 dispersed
Cla09g01795 Cla-Chr9:35478580 Cla09g01920 Cla-Chr9:36848973 4.99E-123 dispersed
Cla10g02160 Cla-Chr10:37197178 Cla09g01795 Cla-Chr9:35478580 2.67E-136 dispersed
Cla09g01795 Cla-Chr9:35478580 Cla11g00299 Cla-Chr11:3455526 6.18E-177 transposed
Cla09g01795 Cla-Chr9:35478580 Cla06g01137 Cla-Chr6:24294637 2.90E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80822 PF07714 PK_Tyr_Ser-Thr 3.40E-48 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01795 - - csv:101211851 944.11