Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01823 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTTCATAGACACATTAAACACAACTGGGTTTTAGAGAAGGATTCTCCATCGGTTGCAGTTTCAGAGATAACTAATAGTCCAAGGCGGAAATGGCGGATCTTCAGTCGGTCATCTTCTTCCCCATTTCCGTCAAAACCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGACCCAGTAATTGTCTCCTCTGGTCATACTTTTGAAGCTGCGTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCGACTCTATTAGATGGTACGAAGCCGGATTTCTCCTCTGTAATTCCAAATCTGGCTCTCAAATCCACCATTTTCAATTGGTGTAAAAACTCCTCTTCTGAAAACCCCAAACCCCTCGATTTCTCCTCCGCCGAAAAGCTCGTTCGTAAATTCATGGCGGCCCACAGCGAAAGCGATGAGGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACTGAAGTCACTCGTCGAACCTCTCATTTCCACTCGAGCTCAGATGAATCTGTAAGCGCCGCCGTTCCAACTCTGCCCCTTCCTCTTGCGACTCGGCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGACATCGAGATCATTGGTACTCTAAACTTACCCGAAGAAGAAGAGATCATCGCGAAGCTTAAAAGCCCTCAGGTTATTGAGATTGAAGAGGCTGTGACTACGCTGAGAAAAATCACAAGAACTCGAGAGGACACTAGGGTTCATCTCTGTTCTCCTCTGATTCTCTCTGCTCTTCGATCTCTCATCGTCTCAAGGTATACTGGCGTTCAAGTGAATTCAGTTGCAGCGCTTGTAAATCTATCATTAGAGAATTTGAACAAGGTGAAGATCGTACGGTCGGGGATTCTCCCCAATTTGATTGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAGGAACATGCTGCCGGCGCCATTTTCAGCTTAGCTCTCGACGACGACAACAAGACGGCAATCGGCGTATTGGGTGCTCTGCCACCATTGATACGGCTGTTGGTATCCGACTCGGAGCAAACTCGGCACGACTCGGCTCTTGCTCTTTACCACTTATCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGTTCGGTGCCGGTTTTTCTCGGGATGGTGAAATCCCGCCACATGGCCGGCCGTATTTTGCTGATTTTGTGTAATTTAGCAGCGTGTTTTGAGGGCCGGGCGGCGTTGTTGGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGGGAGAACGAATTGGACTCCGAGTCGACCCGGGAGAGTTGTGTGGCGGTTCTGTTCGGACTCAGTTACGGCGGTTTGAGGTTCAAGGGTCTGGCAAAAACCGCCGGAGCAATGGATGTTTTCATGGCAATGGAGAAAAATGGAAGTGAGAGATCAAAAGAGAAGGTGAAGAGGATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAACTGCTCGATTCAGGTTGTTTCGGCAGCCGAACTCGGTGTCGACTCGGGGCCGGAATGGACAGATCCACCGCCAACTCGTCCGAATTCTGA 1656 49.21 MEFQEGLMKFMVHRHIKHNWVLEKDSPSVAVSEITNSPRRKWRIFSRSSSSPFPSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGTKPDFSSVIPNLALKSTIFNWCKNSSSENPKPLDFSSAEKLVRKFMAAHSESDEELIQGVAENPVVRFNHAATEVTRRTSHFHSSSDESVSAAVPTLPLPLATRPSCCSSSSSSDIEIIGTLNLPEEEEIIAKLKSPQVIEIEEAVTTLRKITRTREDTRVHLCSPLILSALRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALPPLIRLLVSDSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSRHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSYGGLRFKGLAKTAGAMDVFMAMEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRLGAGMDRSTANSSEF 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35880803 35882458 + ClCG09G018645.1 Cla09g01823 281243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01823 551 Pfam U-box domain 62 132 IPR003613 GO:0004842|GO:0016567
Cla09g01823 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Cla09g01823 551 SUPERFAMILY ARM repeat 237 498 IPR016024 -
Cla09g01823 551 SMART arm_5 263 303 IPR000225 GO:0005515
Cla09g01823 551 SMART arm_5 345 385 IPR000225 GO:0005515
Cla09g01823 551 SMART arm_5 425 468 IPR000225 GO:0005515
Cla09g01823 551 SMART arm_5 304 344 IPR000225 GO:0005515
Cla09g01823 551 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 39 539 - -
Cla09g01823 551 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Cla09g01823 551 Gene3D - 232 507 IPR011989 -
Cla09g01823 551 PANTHER U BOX DOMAIN-CONTAINING 39 539 - -
Cla09g01823 551 SUPERFAMILY RING/U-box 56 135 - -
Cla09g01823 551 CDD RING-Ubox 67 110 - -
Cla09g01823 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 315 352 IPR000225 GO:0005515
Cla09g01823 551 Pfam Armadillo/beta-catenin-like repeat 345 384 IPR000225 GO:0005515
Cla09g01823 551 Pfam Armadillo/beta-catenin-like repeat 307 343 IPR000225 GO:0005515
Cla09g01823 551 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Cla09g01823 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 356 398 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01823 Cla-Chr9:35880803 Cla01g02091 Cla-Chr1:35240987 2.32E-35 dispersed
Cla01g01396 Cla-Chr1:28374684 Cla09g01823 Cla-Chr9:35880803 9.66E-152 wgd
Cla06g01636 Cla-Chr6:29881997 Cla09g01823 Cla-Chr9:35880803 2.28E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01823 - - cmax:111489531 973.385