Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01823 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTTCATAGACACATTAAACACAACTGGGTTTTAGAGAAGGATTCTCCATCGGTTGCAGTTTCAGAGATAACTAATAGTCCAAGGCGGAAATGGCGGATCTTCAGTCGGTCATCTTCTTCCCCATTTCCGTCAAAACCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGACCCAGTAATTGTCTCCTCTGGTCATACTTTTGAAGCTGCGTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCGACTCTATTAGATGGTACGAAGCCGGATTTCTCCTCTGTAATTCCAAATCTGGCTCTCAAATCCACCATTTTCAATTGGTGTAAAAACTCCTCTTCTGAAAACCCCAAACCCCTCGATTTCTCCTCCGCCGAAAAGCTCGTTCGTAAATTCATGGCGGCCCACAGCGAAAGCGATGAGGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACTGAAGTCACTCGTCGAACCTCTCATTTCCACTCGAGCTCAGATGAATCTGTAAGCGCCGCCGTTCCAACTCTGCCCCTTCCTCTTGCGACTCGGCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGACATCGAGATCATTGGTACTCTAAACTTACCCGAAGAAGAAGAGATCATCGCGAAGCTTAAAAGCCCTCAGGTTATTGAGATTGAAGAGGCTGTGACTACGCTGAGAAAAATCACAAGAACTCGAGAGGACACTAGGGTTCATCTCTGTTCTCCTCTGATTCTCTCTGCTCTTCGATCTCTCATCGTCTCAAGGTATACTGGCGTTCAAGTGAATTCAGTTGCAGCGCTTGTAAATCTATCATTAGAGAATTTGAACAAGGTGAAGATCGTACGGTCGGGGATTCTCCCCAATTTGATTGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAGGAACATGCTGCCGGCGCCATTTTCAGCTTAGCTCTCGACGACGACAACAAGACGGCAATCGGCGTATTGGGTGCTCTGCCACCATTGATACGGCTGTTGGTATCCGACTCGGAGCAAACTCGGCACGACTCGGCTCTTGCTCTTTACCACTTATCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGTTCGGTGCCGGTTTTTCTCGGGATGGTGAAATCCCGCCACATGGCCGGCCGTATTTTGCTGATTTTGTGTAATTTAGCAGCGTGTTTTGAGGGCCGGGCGGCGTTGTTGGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGGGAGAACGAATTGGACTCCGAGTCGACCCGGGAGAGTTGTGTGGCGGTTCTGTTCGGACTCAGTTACGGCGGTTTGAGGTTCAAGGGTCTGGCAAAAACCGCCGGAGCAATGGATGTTTTCATGGCAATGGAGAAAAATGGAAGTGAGAGATCAAAAGAGAAGGTGAAGAGGATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAACTGCTCGATTCAGGTTGTTTCGGCAGCCGAACTCGGTGTCGACTCGGGGCCGGAATGGACAGATCCACCGCCAACTCGTCCGAATTCTGA 1656 49.21 MEFQEGLMKFMVHRHIKHNWVLEKDSPSVAVSEITNSPRRKWRIFSRSSSSPFPSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGTKPDFSSVIPNLALKSTIFNWCKNSSSENPKPLDFSSAEKLVRKFMAAHSESDEELIQGVAENPVVRFNHAATEVTRRTSHFHSSSDESVSAAVPTLPLPLATRPSCCSSSSSSDIEIIGTLNLPEEEEIIAKLKSPQVIEIEEAVTTLRKITRTREDTRVHLCSPLILSALRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALPPLIRLLVSDSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSRHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSYGGLRFKGLAKTAGAMDVFMAMEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRLGAGMDRSTANSSEF 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35880803 35882458 + ClCG09G018645.1 Cla09g01823 281243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01823 551 Pfam U-box domain 62 132 IPR003613 GO:0004842|GO:0016567
Cla09g01823 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Cla09g01823 551 SUPERFAMILY ARM repeat 237 498 IPR016024 -
Cla09g01823 551 SMART arm_5 263 303 IPR000225 GO:0005515
Cla09g01823 551 SMART arm_5 345 385 IPR000225 GO:0005515
Cla09g01823 551 SMART arm_5 425 468 IPR000225 GO:0005515
Cla09g01823 551 SMART arm_5 304 344 IPR000225 GO:0005515
Cla09g01823 551 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 39 539 - -
Cla09g01823 551 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Cla09g01823 551 Gene3D - 232 507 IPR011989 -
Cla09g01823 551 PANTHER U BOX DOMAIN-CONTAINING 39 539 - -
Cla09g01823 551 SUPERFAMILY RING/U-box 56 135 - -
Cla09g01823 551 CDD RING-Ubox 67 110 - -
Cla09g01823 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 315 352 IPR000225 GO:0005515
Cla09g01823 551 Pfam Armadillo/beta-catenin-like repeat 345 384 IPR000225 GO:0005515
Cla09g01823 551 Pfam Armadillo/beta-catenin-like repeat 307 343 IPR000225 GO:0005515
Cla09g01823 551 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Cla09g01823 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 356 398 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01823 - - - cmax:111489531 973.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01823 Cla-Chr9:35880803 Cla01g02091 Cla-Chr1:35240987 2.32E-35 dispersed
Cla01g01396 Cla-Chr1:28374684 Cla09g01823 Cla-Chr9:35880803 9.66E-152 wgd
Cla06g01636 Cla-Chr6:29881997 Cla09g01823 Cla-Chr9:35880803 2.28E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1415 . Blo11g00678 . . . . Bma14g01592 . . . . . . . Sed03g0156 . Cpe13g00921 Bhi06g00478 Tan11g0585 Cmetu09g1014 . Hepe02g3127 . Lcy10g1953 . . . . . . . . . Cone2ag0153 Cone16ag0900 Lsi02g01538 Csa05g02927 . . . . . . . Bpe11g01559 . . . Cmo04g02856 Cmo15g00326 Cma04g02726 Cma15g00312 Car04g02629 Car15g00301 . Cpe01g02363 . . . . . . . Cla09g01823 Cam09g1920 Cec09g1985 Cco09g2079 . . Cre01g0585 . . Chy09g00312 Cme09g00333
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01473 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cla02g01224 . 213 810 U-box Gene Family AT2G23140 65.2 9.6e-120 427.9
Cla08g01687 . 1 818 U-box Gene Family AT1G24330 56.7 1.8e-237 819.3
Cla11g01354 . 209 1001 U-box Gene Family AT1G24330 54.3 1.3e-216 750.0
Cla08g01687 . 1 817 U-box Gene Family AT1G67530 56.6 2.2e-235 812.4
Cla11g01354 . 209 1002 U-box Gene Family AT1G67530 53.2 3.4e-212 735.3
Cla01g02188 . 1 362 U-box Gene Family AT4G21350 62.1 2.5e-120 429.1
Cla07g00206 . 135 460 U-box Gene Family AT3G07360 55.3 4.0e-82 302.0
Cla07g00605 CCT 312 499 U-box Gene Family AT1G71020 70.9 8.6e-73 271.6
Cla01g00596 CCT 1056 1255 U-box Gene Family AT1G71020 55.9 3.1e-54 209.9
Cla03g00152 CCT 263 432 U-box Gene Family AT1G71020 57.8 9.6e-48 188.3
Cla05g02163 . 279 444 U-box Gene Family AT1G71020 57.4 6.2e-47 185.7
Cla02g01975 CCT 255 425 U-box Gene Family AT1G71020 57.6 1.1e-46 184.9
Cla07g00605 CCT 63 703 U-box Gene Family AT1G23030 56.6 6.6e-110 395.2
Cla01g00596 CCT 881 1445 U-box Gene Family AT1G23030 53.3 2.1e-79 293.9
Cla02g01975 CCT 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cla03g00152 CCT 93 637 U-box Gene Family AT2G28830 58.3 1.6e-97 354.0
Cla03g00152 CCT 1 671 U-box Gene Family AT3G46510 66.6 5.0e-164 575.1
Cla02g01975 CCT 3 638 U-box Gene Family AT3G46510 66.3 5.9e-157 551.6
Cla05g02163 . 16 653 U-box Gene Family AT3G46510 56.1 1.0e-116 417.9
Cla05g02163 . 12 655 U-box Gene Family AT3G54850 65.6 3.6e-159 558.9
Cla02g01975 CCT 13 628 U-box Gene Family AT3G54850 57.3 2.4e-115 413.3
Cla03g00152 CCT 8 632 U-box Gene Family AT3G54850 55.0 1.7e-100 364.0
Cla02g00969 . 92 684 U-box Gene Family AT5G42340 60.0 2.1e-122 436.8
Cla04g00653 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cla03g00696 . 1 711 U-box Gene Family AT1G29340 68.1 3.4e-246 848.2
Cla05g01204 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cla04g00523 . 4 422 U-box Gene Family AT3G52450 52.4 3.2e-119 425.6
Cla10g01740 . 1 403 U-box Gene Family AT3G52450 50.7 2.4e-114 409.5
Cla10g01740 . 1 403 U-box Gene Family AT2G35930 55.6 4.7e-120 428.3
Cla04g00523 . 7 422 U-box Gene Family AT2G35930 51.4 3.7e-117 418.7
Cla05g01082 . 9 426 U-box Gene Family AT3G19380 64.1 3.6e-147 518.5
Cla05g01082 . 1 426 U-box Gene Family AT1G49780 64.3 1.1e-151 533.5
Cla01g01528 CCT 1 407 U-box Gene Family AT5G64660 54.2 2.6e-121 432.6
Cla01g01528 CCT 1 407 U-box Gene Family AT5G09800 51.3 6.6e-106 381.3
Cla05g02664 . 1 454 U-box Gene Family AT3G49810 62.6 2.1e-153 539.3
Cla08g01635 . 1 454 U-box Gene Family AT3G49810 61.9 9.6e-151 530.4
Cla08g01635 . 1 454 U-box Gene Family AT5G65920 62.8 4.7e-150 528.1
Cla05g02664 . 1 454 U-box Gene Family AT5G65920 61.3 2.9e-147 518.8
Cla05g00164 CCT 1 918 U-box Gene Family AT2G45910 50.3 8.7e-230 793.9
Cla11g00152 . 4 747 U-box Gene Family AT2G19410 50.6 6.7e-208 721.1
Cla01g00454 . 48 843 U-box Gene Family AT4G25160 50.7 1.0e-217 753.8
Cla06g01636 . 1 478 U-box Gene Family AT5G65200 50.1 2.9e-88 323.2
Cla09g01823 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cla06g01636 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cla01g01396 . 29 498 U-box Gene Family AT5G40140 52.1 2.9e-56 216.9
Cla08g00936 . 77 885 U-box Gene Family AT1G76390 61.2 4.1e-269 924.5
Cla08g00936 . 86 885 U-box Gene Family AT1G20780 61.7 4.8e-278 954.1
Cla08g01687 . 1 820 U-box Gene Family AT1G27910 59.6 1.4e-261 899.4
Cla11g01354 . 209 1013 U-box Gene Family AT1G27910 57.8 1.1e-247 853.2
Cla01g01716 . 394 985 U-box Gene Family AT5G67530 74.0 3.4e-260 894.4
Cla05g00226 . 77 207 U-box Gene Family AT5G67530 55.7 5.9e-39 159.5
Cla10g01783 . 12 150 U-box Gene Family AT5G67530 50.4 1.1e-37 155.2
Cla05g00413 . 48 530 U-box Gene Family AT1G04510 70.6 3.1e-193 671.8
Cla05g00413 . 48 504 U-box Gene Family AT2G33340 72.5 8.4e-193 670.2
Cla07g00205 . 10 278 U-box Gene Family AT3G07370 66.9 3.0e-102 368.6
Cla10g01473 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cla02g01224 . 213 810 U-box Gene Family AT2G23140 65.2 9.6e-120 427.9
Cla08g01687 . 1 818 U-box Gene Family AT1G24330 56.7 1.8e-237 819.3
Cla11g01354 . 209 1001 U-box Gene Family AT1G24330 54.3 1.3e-216 750.0
Cla08g01687 . 1 817 U-box Gene Family AT1G67530 56.6 2.2e-235 812.4
Cla11g01354 . 209 1002 U-box Gene Family AT1G67530 53.2 3.4e-212 735.3
Cla01g02188 . 1 362 U-box Gene Family AT4G21350 62.1 2.5e-120 429.1
Cla07g00206 . 135 460 U-box Gene Family AT3G07360 55.3 4.0e-82 302.0
Cla07g00605 CCT 312 499 U-box Gene Family AT1G71020 70.9 8.6e-73 271.6
Cla01g00596 CCT 1056 1255 U-box Gene Family AT1G71020 55.9 3.1e-54 209.9
Cla03g00152 CCT 263 432 U-box Gene Family AT1G71020 57.8 9.6e-48 188.3
Cla05g02163 . 279 444 U-box Gene Family AT1G71020 57.4 6.2e-47 185.7
Cla02g01975 CCT 255 425 U-box Gene Family AT1G71020 57.6 1.1e-46 184.9
Cla07g00605 CCT 63 703 U-box Gene Family AT1G23030 56.6 6.6e-110 395.2
Cla01g00596 CCT 881 1445 U-box Gene Family AT1G23030 53.3 2.1e-79 293.9
Cla02g01975 CCT 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cla03g00152 CCT 93 637 U-box Gene Family AT2G28830 58.3 1.6e-97 354.0
Cla03g00152 CCT 1 671 U-box Gene Family AT3G46510 66.6 5.0e-164 575.1
Cla02g01975 CCT 3 638 U-box Gene Family AT3G46510 66.3 5.9e-157 551.6
Cla05g02163 . 16 653 U-box Gene Family AT3G46510 56.1 1.0e-116 417.9
Cla05g02163 . 12 655 U-box Gene Family AT3G54850 65.6 3.6e-159 558.9
Cla02g01975 CCT 13 628 U-box Gene Family AT3G54850 57.3 2.4e-115 413.3
Cla03g00152 CCT 8 632 U-box Gene Family AT3G54850 55.0 1.7e-100 364.0
Cla02g00969 . 92 684 U-box Gene Family AT5G42340 60.0 2.1e-122 436.8
Cla04g00653 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cla03g00696 . 1 711 U-box Gene Family AT1G29340 68.1 3.4e-246 848.2
Cla05g01204 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cla04g00523 . 4 422 U-box Gene Family AT3G52450 52.4 3.2e-119 425.6
Cla10g01740 . 1 403 U-box Gene Family AT3G52450 50.7 2.4e-114 409.5
Cla10g01740 . 1 403 U-box Gene Family AT2G35930 55.6 4.7e-120 428.3
Cla04g00523 . 7 422 U-box Gene Family AT2G35930 51.4 3.7e-117 418.7
Cla05g01082 . 9 426 U-box Gene Family AT3G19380 64.1 3.6e-147 518.5
Cla05g01082 . 1 426 U-box Gene Family AT1G49780 64.3 1.1e-151 533.5
Cla01g01528 CCT 1 407 U-box Gene Family AT5G64660 54.2 2.6e-121 432.6
Cla01g01528 CCT 1 407 U-box Gene Family AT5G09800 51.3 6.6e-106 381.3
Cla05g02664 . 1 454 U-box Gene Family AT3G49810 62.6 2.1e-153 539.3
Cla08g01635 . 1 454 U-box Gene Family AT3G49810 61.9 9.6e-151 530.4
Cla08g01635 . 1 454 U-box Gene Family AT5G65920 62.8 4.7e-150 528.1
Cla05g02664 . 1 454 U-box Gene Family AT5G65920 61.3 2.9e-147 518.8
Cla05g00164 CCT 1 918 U-box Gene Family AT2G45910 50.3 8.7e-230 793.9
Cla11g00152 . 4 747 U-box Gene Family AT2G19410 50.6 6.7e-208 721.1
Cla01g00454 . 48 843 U-box Gene Family AT4G25160 50.7 1.0e-217 753.8
Cla06g01636 . 1 478 U-box Gene Family AT5G65200 50.1 2.9e-88 323.2
Cla09g01823 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cla06g01636 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cla01g01396 . 29 498 U-box Gene Family AT5G40140 52.1 2.9e-56 216.9
Cla08g00936 . 77 885 U-box Gene Family AT1G76390 61.2 4.1e-269 924.5
Cla08g00936 . 86 885 U-box Gene Family AT1G20780 61.7 4.8e-278 954.1
Cla08g01687 . 1 820 U-box Gene Family AT1G27910 59.6 1.4e-261 899.4
Cla11g01354 . 209 1013 U-box Gene Family AT1G27910 57.8 1.1e-247 853.2
Cla01g01716 . 394 985 U-box Gene Family AT5G67530 74.0 3.4e-260 894.4
Cla05g00226 . 77 207 U-box Gene Family AT5G67530 55.7 5.9e-39 159.5
Cla10g01783 . 12 150 U-box Gene Family AT5G67530 50.4 1.1e-37 155.2
Cla05g00413 . 48 530 U-box Gene Family AT1G04510 70.6 3.1e-193 671.8
Cla05g00413 . 48 504 U-box Gene Family AT2G33340 72.5 8.4e-193 670.2
Cla07g00205 . 10 278 U-box Gene Family AT3G07370 66.9 3.0e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001407 2 2 3 4 1 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 1 2 2 3 2 1 73