Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01827 ATGGCTCCTAGCTCTGTTGTTGTCACAATTGAGAAGCATAACACCTTCCCTTTAGTGGAAATCAATGCCTCTGACTCTTTGTTGCTTCCTGAGAAACAGAAGGCTGCTAGTCCCAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCTCACAGAGCTCTGTTTTTCTTCTCATGGCTGGCTATGACTGTCAAGACTGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAATTGTATAGGTTCATTAAGGCTTTTCTTGTTATTTCAATTGCGGGTTTGATCGTTGAAGTTGTTGCCCACTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTTGAGGTTCATGGGCTTGTTCAATGGTTTTATATTTCCTGGCTTTCGTTTCGAGTTGATTACATTGCTCCACTGGTATTAATACTTTCCAAGTTCTGCATTGTTCTGTTCCTGATCCAATCTCTCGATCGTCTTGTTCTCTGTTTTGGTTGCTTTTGGATCAAGTTCAAGAAAATCAAACCCACGATTCAAGACGACGCTTATGATTTGGAAGATGCTTTAACTTTTCCTATGGTTCTTGTTCAAATTCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTAGATGATTCAGATGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGATTGATCCGAACTGGATACAAAGCTGGGAATCTCAAGTCTGCCATGGCTTGTGATTACGTCAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTGACTATCCCTCATTTCAAGCTTTCTTTTTCAACAGTCTCAAATAGAAGCTTACCTTTATTGAACATGTCACAGGGAAATCCTGAGCTGGGTCTTGTTCAAGCTCGTTGGGCGTTTGTAAACAAGGAAGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGCGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGTGTTTGGAGAACGAAAGCACTTGAGGAATCCGGTGGCTGGCTTGAGCGGACGACTGTGGAAGATATGGATATTGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTATAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTCCCTTCAATCATTACTTCAAAGATATCGATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTCCTTAGAAAACTCATACTTCCATTCTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTTTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTACTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCATATCTCTTGTTTGAGAACACAATGTCTGTCACAAAGTTCAATGCCATGGTTTCGGGGCTATTCCAGCTGGGAAGTTCATACGAATGGGTTGTGACGAAGAAGACAGGACGATCATCTGAATCCGACTTCTTAGCATTCGCAGAGCGAGAGTCGAAAACATCAAATGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGACTCGAGTTGTTGAGTAAATTGAACCAACAAGAGAGGCAAAAGGGTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTTGCTCTTGCTTTTCTGCTGCTCACTGCATCGGCTAGAAGCTTGCTGTCAGAACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGTTTGTCATTCCTGGTGGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 2055 41.65 MAPSSVVVTIEKHNTFPLVEINASDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKTVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLVISIAGLIVEVVAHFKKWNLRMIQPLELEVHGLVQWFYISWLSFRVDYIAPLVLILSKFCIVLFLIQSLDRLVLCFGCFWIKFKKIKPTIQDDAYDLEDALTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTIPHFKLSFSTVSNRSLPLLNMSQGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKTSNEEKILRRHSESGLELLSKLNQQERQKGSKKKRNKVYRKELALAFLLLTASARSLLSEHGVHFYFLLFQGLSFLVVGLDLIGEQMN 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35949451 35951739 + ClCG09G018680.2 Cla09g01827 281247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01827 684 Coils Coil 618 638 - -
Cla09g01827 684 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 3 683 - -
Cla09g01827 684 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 195 439 IPR029044 -
Cla09g01827 684 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 522 IPR029044 -
Cla09g01827 684 PANTHER - 3 683 - -
Cla09g01827 684 Pfam Glycosyl transferase family group 2 296 519 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01827 K20887 CSLC4; xyloglucan glycosyltransferase 4 [EC:2.4.1.-] - csv:101208151 1232.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01827 Cla-Chr9:35949451 Cla10g01848 Cla-Chr10:34409962 2.13E-129 dispersed
Cla09g01827 Cla-Chr9:35949451 Cla09g01834 Cla-Chr9:36014918 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01730 . 220 382 REM Transcription Factor Family AT1G49480 70.6 9.1e-57 217.2
Cla05g02645 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cla09g01834 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.7e-268 919.8
Cla09g01827 . 6 684 REM Transcription Factor Family AT2G24630 67.6 2.0e-264 908.7
Cla05g02654 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.4e-262 900.6
Cla08g01643 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.8e-260 895.6
Cla09g00790 . 5 769 REM Transcription Factor Family AT2G24630 56.1 1.0e-236 816.6
Cla05g02645 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cla09g01834 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.7e-268 919.8
Cla09g01827 . 6 684 REM Transcription Factor Family AT2G24630 67.6 2.0e-264 908.7
Cla05g02654 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.4e-262 900.6
Cla08g01643 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.8e-260 895.6
Cla09g00790 . 5 769 REM Transcription Factor Family AT2G24630 56.1 1.0e-236 816.6
Cla05g02645 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cla09g01834 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.7e-268 919.8
Cla09g01827 . 6 684 REM Transcription Factor Family AT2G24630 67.6 2.0e-264 908.7
Cla05g02654 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.4e-262 900.6
Cla08g01643 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.8e-260 895.6
Cla09g00790 . 5 769 REM Transcription Factor Family AT2G24630 56.1 1.0e-236 816.6
Cla09g01730 . 220 382 REM Transcription Factor Family AT1G49480 70.6 9.1e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33