Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g01830 | ATGTCACAAGGGTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTTGCTCGCCGTCAAATTAGTACCCAACTCATCGAAATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTCGAACCCACAAAAGTTGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGAACCCATGCCTTTGTCCTTATCGTCAATTGGCAGCCTTCCCAGTGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCAATTTCACTTCTCCAATTCCAGTCCCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGTGAGGAATATCGCCTTGGTTCGTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCTAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTGAGGGATTTGAAGCTACCAGTTTCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGAGAGCTGTTCTCTTTTGTTCTTGGTAACACTGTCGAAGCTTGA | 552 | 46.2 | MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 35963985 | 35964536 | - | ClCG09G018710.1 | Cla09g01830 | 281250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g01830 | 183 | Pfam | 2'-5' RNA ligase superfamily | 41 | 155 | - | - | |
| Cla09g01830 | 183 | PANTHER | - | 1 | 182 | - | - | |
| Cla09g01830 | 183 | Gene3D | Cyclic phosphodiesterase | 5 | 178 | - | - | |
| Cla09g01830 | 183 | SUPERFAMILY | LigT-like | 5 | 155 | IPR009097 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla09g01830 | Cla-Chr9:35963985 | Cla09g01836 | Cla-Chr9:36022560 | 2.04E-125 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g01830 | - | - | csv:101208638 | 351.673 |