Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01836 ATGGCGGTAAGTGGAAGAAGTTTGATGGAAGGAGTTCTCCCATTTCCGGCGATGATAGCGATGGAGTGTATCAACGTCGGTCTCAACACTCTTTTCAAAGCCGCCACCGCCGCCGGCATGAGCCACCACGTGTTCGTCGTCTATTCTTACTCTTTCGCCGCCCTTCTCCTCCTCCCTTCTCCCTTCATCTCTCGCAGATCCACTCGTCTTCCACCTCTCACTTTCTCTCTACTTTCGAAGATCGCTCTTCTCGGATTCATCGGTTCTTCTTCGCAGATTATGGGATACACGGGAATCAATTACAGCTCTCCAACGCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTTGCCATCATCTTCAGGATGGAGAAAGTGGTATTGAAAAGCAATAGCAGTCAAGCCAAAGTGATGGGCACAATAATATCAATAATAGGTGCATTTGTGGTCACATTTTACAAAGGTCCAAGGATCATGTTCTCTTCAGAGCCCATTTCTCTTTCACTTCATCACCATCCACAACTATCTTCTTCAGATTCTGATTGGATCATTGGCAGCCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATTGTTCAGACAAAAATAATGAAGGAATTCCCAGAAGAGGCAACAGTGATCTTCTTCTACAACTTAACTGTGGCCATCATAGCTGCAGTTGTAGGTGTGATTTTTGAGACAGATCCAAGTGCTTGGATTTTGAGGCAAAATACAGCATTGGCCTCTGTTTTATGCTCTGGACTATTTGGATCATGTTTAAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGGCCAGTGTTCGTAGCAATGTTTAAGCCGTTATCGATCGTTGTCGCTATCGTAATGGGAGTTCTGTTTCTTGGTGATTCTCTATATCTTGGAAGTCTCATTGGAGCATCCATAATATCCATAGGGTTTTACACTGTAATGTGGGGAAAATCAAAAGAAGAAATGGGTGTTGGAGAAGAAAAAGAAGAAGGCCATAGCTATAATCTTGATGGTAACAAGGAATCAAATGAAGATCAGAGAGTACCTCTTCTTGGAAGCTACAACACACAGAGATACAGTGCAGACCATGGTTTTGAATTTCCCATTTCAGATAGTTTTGAATCTTCCCTTGCGATGTCACAAGGGTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTTGCTCGCCGTCAAATTAGTACCCAACTCATCGAAATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTCGAACCCACAAAAGTTGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGAACCCATGCCTTTGTCCTTATCGTCAATTGGCAGCCTTCCCAGTGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCAATTTCACTTCTCCAATTCCAGTCCCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGTGAGGAATATCGCCTTGGTTCGTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCTAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTGAGGGATTTGAAGCTACCAGTTTCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGAGAGCTGTTCTCTTTTGTTCTTGGCCGAGGAGATTGTCTGTTGGTGGTGTGTGGTGATGTTCTGATGAGAACGGCATATAGGAGCCAAATGGAGGATGATTCAGCTTCCTCCATAGCTTCATACTTTGCAGGCCAGAAATTGGATATTAACAATATGCACCTCGTCGACAGAGTCAATGTCATATCCACTTTCAAGTATTTTGTCCATTGGAATAATCTGCCCTGA 1905 44.2 MAVSGRSLMEGVLPFPAMIAMECINVGLNTLFKAATAAGMSHHVFVVYSYSFAALLLLPSPFISRRSTRLPPLTFSLLSKIALLGFIGSSSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVVLKSNSSQAKVMGTIISIIGAFVVTFYKGPRIMFSSEPISLSLHHHPQLSSSDSDWIIGSLLLTAEYILVPLWYIVQTKIMKEFPEEATVIFFYNLTVAIIAAVVGVIFETDPSAWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSLIGASIISIGFYTVMWGKSKEEMGVGEEKEEGHSYNLDGNKESNEDQRVPLLGSYNTQRYSADHGFEFPISDSFESSLAMSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGRGDCLLVVCGDVLMRTAYRSQMEDDSASSIASYFAGQKLDINNMHLVDRVNVISTFKYFVHWNNLP 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36022560 36037246 - ClCG09G018770.2 Cla09g01836 281256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01836 634 SUPERFAMILY Multidrug resistance efflux transporter EmrE 228 331 - -
Cla09g01836 634 Pfam EamA-like transporter family 198 326 IPR000620 GO:0016020|GO:0016021
Cla09g01836 634 Pfam EamA-like transporter family 24 155 IPR000620 GO:0016020|GO:0016021
Cla09g01836 634 PANTHER WAT1-RELATED PROTEIN 11 343 IPR030184 GO:0016021|GO:0022857
Cla09g01836 634 Pfam 2'-5' RNA ligase superfamily 431 545 - -
Cla09g01836 634 Gene3D Cyclic phosphodiesterase 396 569 - -
Cla09g01836 634 SUPERFAMILY LigT-like 395 545 IPR009097 -
Cla09g01836 634 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 158 - -
Cla09g01836 634 PANTHER WAT1-RELATED PROTEIN 11 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02523 Cla-Chr5:36570980 Cla09g01836 Cla-Chr9:36022560 5.35E-69 dispersed
Cla09g01836 Cla-Chr9:36022560 Cla10g01375 Cla-Chr10:28801454 2.39E-88 dispersed
Cla09g01830 Cla-Chr9:35963985 Cla09g01836 Cla-Chr9:36022560 2.04E-125 proximal
Cla09g01831 Cla-Chr9:35966189 Cla09g01836 Cla-Chr9:36022560 0 proximal
Cla09g01836 Cla-Chr9:36022560 Cla09g01838 Cla-Chr9:36047419 4.92E-81 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01836 - - csv:101208880 630.172