Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01844 ATGGATACAAGCTTGTTCAGGGGTCATCCTGAAAAGAGAGATTCATGGAGGACAATCTTCACTTTAGCTTATCAGAGTTTGGGGGTTGTTTATGGGGATTTAAGCACTTCTCCTTTGTATGTGTATAAAAGCACTTTTGCAGAGAACCTTCAGCACTCTGAGACTAATGAGGAGGTTTATGGGGTTCTTTGCTTTGTGTTTTGGACTTTGACACTTATCCCTTTACTTAAATATGTGTTTATAGTTCTTAGAGCTGATGATAATGGCGAAGGGGGAACTTTTGCTCTGTATTCATTGCTCTGTCGCCATGCTCGGTTGAGCTCTCTCCCAAATCACCAACTAGCGGATGAGGAGCTTTCTGCATATACAATTGACAGCCCACAAACTGAAAACACTACTAATTTTAGTTTTAGTTCTTGTCTGAAATCAACTTTGGAGAAATGTAAAGTTCTGCAAAAAATGTTGCTTGTTCTTGCTTTGATTGGGACTTGCATGGTTATTGGAGATGGTGTTCTCACACCAGCAATCTCAGTTTTTTCAGCTGTTTCTGGGCTTGAGTTATCCATGGCTAAGGAACATCACCAGTATATCGAAGTCCCTCTAGCGTGTGGCATATTGGTCTTCTTATTCGCATTGCAACACTATGGAACGCATCAGGTTGGGTTCTTGTTTGCTCCAGTTGTAATTGTATGGCTTCTATGCATTAGTGCCATTGGTTTGTACAATATCTTCTATTGGAATCCCCTGGTTTACAAAGCACTCTCGCCATACTACATGTATAAGTTCTTAAAAAAAACCAAAAAGCAAGGTTGGATGGCACTCGGCGGAATCCTCTTGTGTATAACAGGCTCAGAAGCTATGTTTGCTGATCTTGGGCACTTCTCACAGTTTTCTATCAAGCTTGCTTTCACTTTTGCGGTTTATCCATCCTTAGTTCTCGCATATATGGGACAAGCTGCTTATCTTTCTAAGCATCACAATCTCGATAATGAATATCGGATCGGATTCTATGTTTCTGTTCCCGAGAAGGTAAGATGGCCAGTTCTTGCAATAGCAATACTTGCAGCAGTTGTGGGTAGTCAAGCGATCATCACCGGCACATTTTCGATCATCAAACAATGTTCTGCTTTGGGTTGTTTTCCAAGGGTAAAGATCATTCATACGTCTTCAAAAATACATGGCCAGATTTACATTCCCTTGATCAACTGGATTCTAATGATATTGTGTTTGGCTGTTACCATTGGATTTAGAGACACAAAACGACTAGGCAATGCAGCAGGGTTGGCGGTTATTACTGTTATGCTCGTCTCAACATGTCTAATGTCACTCGTCATTGTATTATGTTGGCGTAAAAGTGTGTTGCTGGCCATAGCCTTCATACTCTTCTTTGGCTCCGTAGAAGCTCTCTACTTCTCTGCTTCTCTTATTAAGTTCTTTGAAGGGGCTTGGGTTCCTATTGTTCTTTCATTGACCTTCCTTGTGGTTATGTATGTTTGGCACTATGGCACAGTGAAGAAATATGAAGCTGATGTCGAAAACAAAGTCCCTATAAATTGGCTCCTCAGTATAGGACCCAAAATTGGGATCGTTCGAGTCCGGGGGATCGGTCTTGTACATACCGAACTCGTTTCGGGGATCCCTGCCATTTTCTCTCATTTTGTCACCAACCTTCCAGCCTTTCATCAAATTCTAGTCTTCCTCTGCATCAAATCTGTCACAGTGCCTCATGTGAGGCCTGAGGAAAGGTTTTTAGTTGGACGAGTTGGGCCAAAGGAGTATCGACTCTACCGTTGCATCGCACGGTATGGCTATCGTGACATGCACAAGGACGACTTGGAGTTCGAGAGAGATCTTGCTTGCAGCATTGCAGAATTCATACGGTCCGAGAGAACAGAATGCAACAATTTTAGACACGAAGACTTGGACGACAATGAAAGAATGACAGTGATTGGGACTTCATCAACCCAACTAGACGGTATACAAATGTGTGAAAACGAAACATATGCTTCGCCAATCATGGGAACTTCAGAGATAATAAAGACGGAGCAGTTGAGAAAAAGAGTTAGATTCGTTCTCCCCGAGAGTCCGAAAATGAACATCGATACGAGGGGAGAGTTGCAAGAGTTGATGGAGGCAAGGGAGGCAGGAATAGCATTTATAATGGGGCATTCATATGTGAAGGCAAAGAAAGGATCAGGTTGGATGAAGAAGCTTGTGATTAATTATGGATATGATTTCTTGAGGAAAAATTCAAGAGGGCCATCTTATGCTTTGAGCATTCCTTATGCTTCTACTCTTGAGGTTGGTATGGTTTATTATGTTTAA 2325 41.94 MDTSLFRGHPEKRDSWRTIFTLAYQSLGVVYGDLSTSPLYVYKSTFAENLQHSETNEEVYGVLCFVFWTLTLIPLLKYVFIVLRADDNGEGGTFALYSLLCRHARLSSLPNHQLADEELSAYTIDSPQTENTTNFSFSSCLKSTLEKCKVLQKMLLVLALIGTCMVIGDGVLTPAISVFSAVSGLELSMAKEHHQYIEVPLACGILVFLFALQHYGTHQVGFLFAPVVIVWLLCISAIGLYNIFYWNPLVYKALSPYYMYKFLKKTKKQGWMALGGILLCITGSEAMFADLGHFSQFSIKLAFTFAVYPSLVLAYMGQAAYLSKHHNLDNEYRIGFYVSVPEKVRWPVLAIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPLINWILMILCLAVTIGFRDTKRLGNAAGLAVITVMLVSTCLMSLVIVLCWRKSVLLAIAFILFFGSVEALYFSASLIKFFEGAWVPIVLSLTFLVVMYVWHYGTVKKYEADVENKVPINWLLSIGPKIGIVRVRGIGLVHTELVSGIPAIFSHFVTNLPAFHQILVFLCIKSVTVPHVRPEERFLVGRVGPKEYRLYRCIARYGYRDMHKDDLEFERDLACSIAEFIRSERTECNNFRHEDLDDNERMTVIGTSSTQLDGIQMCENETYASPIMGTSEIIKTEQLRKRVRFVLPESPKMNIDTRGELQELMEAREAGIAFIMGHSYVKAKKGSGWMKKLVINYGYDFLRKNSRGPSYALSIPYASTLEVGMVYYV 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36099892 36105069 - ClCG09G018850.1 Cla09g01844 281264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01844 774 TIGRFAM kup: potassium uptake protein 22 774 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cla09g01844 774 Pfam K+ potassium transporter 24 606 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cla09g01844 774 PANTHER POTASSIUM TRANSPORTER 6 8 773 - -
Cla09g01844 774 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 8 773 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla09g01844 Cla10g01372 CCT
Cla09g01844 Cla10g01372 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01317 Cla-Chr5:16070873 Cla09g01844 Cla-Chr9:36099892 0 transposed
Cla07g00469 Cla-Chr7:6536596 Cla09g01844 Cla-Chr9:36099892 0 transposed
Cla10g00882 Cla-Chr10:20126885 Cla09g01844 Cla-Chr9:36099892 5.08E-62 transposed
Cla10g01019 Cla-Chr10:23590456 Cla09g01844 Cla-Chr9:36099892 0 transposed
Cla11g00037 Cla-Chr11:492278 Cla09g01844 Cla-Chr9:36099892 0 transposed
Cla10g01372 Cla-Chr10:28768947 Cla09g01844 Cla-Chr9:36099892 0 wgd
Cla05g02527 Cla-Chr5:36651067 Cla09g01844 Cla-Chr9:36099892 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01844 K03549 - csv:101218141 1506.5