Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01850 ATGGAATCTGAACCCGGAGCGACCATTATAAATACTCCTCTTTTCTCACTATTTCGCAGTAGATTCAGTTTGGACTTAGCAACGTATAATATGGATCACCCATCTGAAACTTTAAGGCACAAATGTGCAGGTTGTTTCAGGCAGTTCAACAAAATAGAGCACTTAGTAGAGCATATGAGAATCTCATTTCACTCATTTCATGAACCCACTTGCTCCCTTTGCCACAAACATTGCAGATCCTTTGAATCTCTTAGAGAACATCTTATTGGGCCACTGCCAAAGCAAGATTGCAACAACATATTCAATACAAGAGGATGCAAAATCTGCTTAGCCATCTTTGAGAGTCCACTCAAGCTTAGGGCTCACCATGAAAGATGTCAACTTAGGCCCGTAAATTCCAGGGAAATTATGGGGCGTTTTGGGAACTTGGGAAATTGTGACAAATTGATGACGATGGAAAATGGGGGCACAAAGAGGTATGAAAATGAAGCAGTGGCATTGAGTTGCACAATGGTGGGCGCTGGCAGCGATGGCTCGCTTCATACCTGCGCAAGGGTTTGCCTTATCCACCAAAATGAGTCCCTCATCTTTTCTACTTATGTTCAGCCAACCCTTCCCGTCACTAACTATAGGTTTGAATCCACGGGTGTTCGTCCAGAATACTTGAGAGATGCAATGCCATTGAAGCAAGTTCAAAAGAAAATACAAGAGTTTCTATGCAATGGAGAACCAATGTGGAAAATTCGACCTGGAGCTACTGGAAAAGCAAGGATTCTTGTGGGTCATGGCGTAGAAGAAGACCTTACACGTTTGCACATTGACTATCCTACTTTCATGATAAGATACAATATGGAAAATGGGAAGAAAGAGGGTTATGAGGGGTGTGTTGCCACAATGAGATTGTACATGAGAATGAAATCCCAAGTTCACAAAAGAGAGGATTATCCATTGGCTTCTGATCCACAAAATAAACATAACTTTGCAATTTGGAAGCAATTTGAGCTTGAGAAGATGAGCCCACAACAAATGTTGCAAATTTCAAGATCTGATTACTATTGTTGGTGCTTAGACTCCAACCCTTCATAA 1086 41.53 MESEPGATIINTPLFSLFRSRFSLDLATYNMDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIRYNMENGKKEGYEGCVATMRLYMRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDSNPS 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36164257 36168850 - ClCG09G018910.2 Cla09g01850 281270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01850 361 PANTHER OS02G0709000 PROTEIN 282 358 - -
Cla09g01850 361 PANTHER OS02G0709000 PROTEIN 33 281 - -
Cla09g01850 361 SMART exoiiiendus 163 311 IPR013520 -
Cla09g01850 361 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 33 281 - -
Cla09g01850 361 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 282 358 - -
Cla09g01850 361 SUPERFAMILY Ribonuclease H-like 165 303 IPR012337 -
Cla09g01850 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 69 IPR013087 -
Cla09g01850 361 Gene3D - 160 286 IPR036397 GO:0003676
Cla09g01850 361 ProSitePatterns Zinc finger C2H2 type domain signature. 42 64 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01850 Cla-Chr9:36164257 Cla11g01730 Cla-Chr11:30915363 2.36E-12 dispersed
Cla09g01850 Cla-Chr9:36164257 Cla09g01851 Cla-Chr9:36184669 1.85E-147 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61774 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01850 - - csv:101218380 520.776