Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g01850 | ATGGAATCTGAACCCGGAGCGACCATTATAAATACTCCTCTTTTCTCACTATTTCGCAGTAGATTCAGTTTGGACTTAGCAACGTATAATATGGATCACCCATCTGAAACTTTAAGGCACAAATGTGCAGGTTGTTTCAGGCAGTTCAACAAAATAGAGCACTTAGTAGAGCATATGAGAATCTCATTTCACTCATTTCATGAACCCACTTGCTCCCTTTGCCACAAACATTGCAGATCCTTTGAATCTCTTAGAGAACATCTTATTGGGCCACTGCCAAAGCAAGATTGCAACAACATATTCAATACAAGAGGATGCAAAATCTGCTTAGCCATCTTTGAGAGTCCACTCAAGCTTAGGGCTCACCATGAAAGATGTCAACTTAGGCCCGTAAATTCCAGGGAAATTATGGGGCGTTTTGGGAACTTGGGAAATTGTGACAAATTGATGACGATGGAAAATGGGGGCACAAAGAGGTATGAAAATGAAGCAGTGGCATTGAGTTGCACAATGGTGGGCGCTGGCAGCGATGGCTCGCTTCATACCTGCGCAAGGGTTTGCCTTATCCACCAAAATGAGTCCCTCATCTTTTCTACTTATGTTCAGCCAACCCTTCCCGTCACTAACTATAGGTTTGAATCCACGGGTGTTCGTCCAGAATACTTGAGAGATGCAATGCCATTGAAGCAAGTTCAAAAGAAAATACAAGAGTTTCTATGCAATGGAGAACCAATGTGGAAAATTCGACCTGGAGCTACTGGAAAAGCAAGGATTCTTGTGGGTCATGGCGTAGAAGAAGACCTTACACGTTTGCACATTGACTATCCTACTTTCATGATAAGATACAATATGGAAAATGGGAAGAAAGAGGGTTATGAGGGGTGTGTTGCCACAATGAGATTGTACATGAGAATGAAATCCCAAGTTCACAAAAGAGAGGATTATCCATTGGCTTCTGATCCACAAAATAAACATAACTTTGCAATTTGGAAGCAATTTGAGCTTGAGAAGATGAGCCCACAACAAATGTTGCAAATTTCAAGATCTGATTACTATTGTTGGTGCTTAGACTCCAACCCTTCATAA | 1086 | 41.53 | MESEPGATIINTPLFSLFRSRFSLDLATYNMDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIRYNMENGKKEGYEGCVATMRLYMRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDSNPS | 361 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 36164257 | 36168850 | - | ClCG09G018910.2 | Cla09g01850 | 281270 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g01850 | 361 | PANTHER | OS02G0709000 PROTEIN | 282 | 358 | - | - | |
Cla09g01850 | 361 | PANTHER | OS02G0709000 PROTEIN | 33 | 281 | - | - | |
Cla09g01850 | 361 | SMART | exoiiiendus | 163 | 311 | IPR013520 | - | |
Cla09g01850 | 361 | PANTHER | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED | 33 | 281 | - | - | |
Cla09g01850 | 361 | PANTHER | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED | 282 | 358 | - | - | |
Cla09g01850 | 361 | SUPERFAMILY | Ribonuclease H-like | 165 | 303 | IPR012337 | - | |
Cla09g01850 | 361 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 40 | 69 | IPR013087 | - | |
Cla09g01850 | 361 | Gene3D | - | 160 | 286 | IPR036397 | GO:0003676 | |
Cla09g01850 | 361 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 42 | 64 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g01850 | Cla-Chr9:36164257 | Cla11g01730 | Cla-Chr11:30915363 | 2.36E-12 | dispersed | |
Cla09g01850 | Cla-Chr9:36164257 | Cla09g01851 | Cla-Chr9:36184669 | 1.85E-147 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61774 | None | None | None | None | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g01850 | - | - | csv:101218380 | 520.776 |