Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g01851 | ATGGATCATTCACTCGAGACGTCGAGGCACAAGTGTGCAGCTTGTTTCAGACAATTCAACAAGATAGAGCATTTGGTAGATCATATGAGGACTTCTTTTCACTCACATCATGAACCCACTTGTGCCATTTGCAAGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCACTGCCAAAACAAGAATGCAAAAACATATATGCTACACGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCTTACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGGCTGTAAATTCTGGACTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGACGGTTCGACTGTCATCGATAGCGGAAGAACTCGAGGCTCGGGCGCCGTGGCGTTAGCTTGCAAATATGTAGGTGGGGGCAGCGATGGGTCGCTGGACATATGCGCCAAGGTTTGCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCTGTCACAAATTATAGGTATGAAACGGTGGGAATTCGTCCAGAACACATTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGATATCCTCTACAATGGAGGTGAGAAGGCTAGGATTCTTGTGGGTCACTTTGTCGAAGATGATCTCAAACGTCTACAAATCGGATACCCATCCGTCATGATAAGGGACACAGCAAATTATCCGCCATTGATGAAGACGAGCAAGCTTTGCAATTCACTCAAATATCTAGCTCAAGTGTATCTAGGATTTGAGCTACAAAATGGGATACAAGAACCTTATGAAGAATGTATTGTGGCCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAACATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGCTAATTGGAGGGAAAATGAGCTTCAAAGGATGAGTCCAGAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCGAGGATTTGA | 1035 | 42.71 | MDHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSHHEPTCAICKKHCRSLDSLREHLIGPLPKQECKNIYATRGCKFCLAILDSSYSQRLHQERCQFSAVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGSDGSLDICAKVCLIDESENVIFYSYVKPIIPVTNYRYETVGIRPEHIRDAMPLKQVQKKIQDILYNGGEKARILVGHFVEDDLKRLQIGYPSVMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFELQNGIQEPYEECIVAMRLYKRMRSQVHRIEKHPMASDPQNKNNFANWRENELQRMSPEQMLEISRSDYYCWCMDSRI | 344 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 36184669 | 36188524 | - | ClCG09G018930.1 | Cla09g01851 | 281271 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g01851 | 344 | SUPERFAMILY | Ribonuclease H-like | 145 | 291 | IPR012337 | - | |
| Cla09g01851 | 344 | PANTHER | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED | 3 | 342 | - | - | |
| Cla09g01851 | 344 | Gene3D | - | 128 | 309 | IPR036397 | GO:0003676 | |
| Cla09g01851 | 344 | CDD | REX4_like | 132 | 287 | IPR037431 | GO:0006364|GO:0008408 | |
| Cla09g01851 | 344 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 12 | 34 | IPR013087 | - | |
| Cla09g01851 | 344 | PANTHER | OS02G0709000 PROTEIN | 3 | 342 | - | - | |
| Cla09g01851 | 344 | SMART | exoiiiendus | 130 | 295 | IPR013520 | - | |
| Cla09g01851 | 344 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 10 | 39 | IPR013087 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla04g00336 | Cla-Chr4:11747010 | Cla09g01851 | Cla-Chr9:36184669 | 4.00E-100 | dispersed | |
| Cla09g01851 | Cla-Chr9:36184669 | Cla11g01730 | Cla-Chr11:30915363 | 5.77E-25 | dispersed | |
| Cla09g01850 | Cla-Chr9:36164257 | Cla09g01851 | Cla-Chr9:36184669 | 1.85E-147 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g01851 | - | - | csv:101218614 | 672.159 |