Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01858 ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGTGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATATATGTCTGGTGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCCACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTTATGACATTACAAAATGCTCCCCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCATTCAAAGAAATGGTCGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTGCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCGTTAGGGGAACGTTTTAAGAAGCTAAAGGCCAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATGTGTCAAACATAGAAGATCTAGATGTACATACTACACAGCAAAGAAACAAGAATAATGAGTTTACCTTTCCAGTAGAGGGTTCATCCCTTGAAAGACTGAATCACCCTACTGCTGCAGCTAGTCAGGAGGATGGTTTTAACGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTTCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGATATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACGGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAACAAGAGGTCTTTTAGCGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGACTATTGCAGATGGTGATAGGGACTATTTGCAGTCAAAACCTCCATCTGAGCGTAATTACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCATCAGATGGAACAGTTGTTCAACGCAAGGGGCGGTTCAAAGTTACTTCAGCGGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCTGTCTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAACATCCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGTTTCAGAGGCGGTCACCAGTGACCTTCTGCAGGCTACCCCATCAAGTGATAGTTTCTATGATGTCCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTTGTTGAGGAATTAGAGAAGCAAAAGTTGAAAAATGCGGAGGTATTGTTTCATACTTGA 2025 42.27 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDVSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLNHPTAAASQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKTIADGDRDYLQSKPPSERNYSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKCLEQMTGKNPDVSEAVTSDLLQATPSSDSFYDVQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNAEVLFHT 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36281233 36290302 + ClCG09G019000.2 Cla09g01858 281278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01858 674 MobiDBLite consensus disorder prediction 481 507 - -
Cla09g01858 674 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Cla09g01858 674 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Cla09g01858 674 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01858 674 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 670 - -
Cla09g01858 674 CDD STKc_OSR1_SPAK 14 277 - -
Cla09g01858 674 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 670 - -
Cla09g01858 674 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01858 674 Coils Coil 639 666 - -
Cla09g01858 674 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01858 674 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cla09g01858 674 MobiDBLite consensus disorder prediction 449 464 - -
Cla09g01858 674 Gene3D Transferase(Phosphotransferase) domain 1 97 311 - -
Cla09g01858 674 MobiDBLite consensus disorder prediction 437 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01858 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 1290.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00643 Cla-Chr6:7924745 Cla09g01858 Cla-Chr9:36281233 1.56E-43 dispersed
Cla09g01858 Cla-Chr9:36281233 Cla10g01223 Cla-Chr10:26876990 1.47E-13 dispersed
Cla09g01858 Cla-Chr9:36281233 Cla05g00470 Cla-Chr5:4284570 6.84E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g01746 . 1 766 MAP Kinase Kinase Kinase Kinase AT1G53165 53.6 7.7e-200 694.1
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.8e-67 252.3
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.5e-65 247.3
Cla11g01746 . 1 763 MAP Kinase Kinase Kinase Kinase AT3G15220 55.5 4.7e-205 711.4
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.5e-67 253.4
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.5e-65 248.1
Cla11g01134 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.3e-241 833.2
Cla07g00676 . 52 570 MAP Kinase Kinase Kinase Kinase AT1G69220 61.1 1.4e-152 537.3
Cla07g00673 . 552 852 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 1.2e-71 268.5
Cla09g01858 . 1 670 MAP Kinase Kinase Kinase Kinase AT5G14720 65.8 1.8e-249 859.0
Cla05g00470 CCT 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.6e-96 350.9
Cla10g00086 . 594 1269 MAP Kinase Kinase Kinase Kinase AT4G24100 62.5 5.1e-226 781.2
Cla10g00086 . 598 1269 MAP Kinase Kinase Kinase Kinase AT4G10730 62.1 1.6e-224 776.2
Cla10g00086 . 592 924 MAP Kinase Kinase Kinase Kinase AT1G70430 52.6 1.6e-100 364.0
Cla10g01223 . 1 695 MAP Kinase Kinase Kinase Kinase AT1G79640 56.6 2.6e-205 712.2
Cla09g01858 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.8e-103 372.9
Cla05g00470 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.6 2.1e-143 506.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80825 PF00069 Pkinase 2.80E-60 CL0016 Cla PK