Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01879 ATGTTTGTCGATACGATTGCTAAGTGGGCAAAGAAAGATGTGAGGCAGCTTCAAACCAACTTCTGGAGGAACGAAGCATCTCAAAAGGCATGCAAATTCCTAAGAAGAAAATGCTTAGCCGATTGCATATTTGCGCCCTACTTTCCTCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTAAATTCTCTAGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGTTGTGTCGGGGCCATCTCCGCTCTACAAAGACAAGTCATTCGCTTGCAGAAAGAGCTCGATGCTACAAATGCTGATTTAGTGCGATATGCAAGCGGGGGCGCTCGCCCGCCCTCGCAATTTGGAAGAAGGGCAGCAACTGCCTCGATGACTCGCCATCATTCTGACCTGTCTTTTCTTTCTCCCTTGAGTAGTAATGATCATGATGATCCTTATTGCCATGATAAAGAGGAAGACAATTGA 543 48.25 MFVDTIAKWAKKDVRQLQTNFWRNEASQKACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISALQRQVIRLQKELDATNADLVRYASGGARPPSQFGRRAATASMTRHHSDLSFLSPLSSNDHDDPYCHDKEEDN 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36482539 36486707 - ClCG09G019240.2 Cla09g01879 281299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01879 180 Pfam Lateral organ boundaries (LOB) domain 30 123 IPR004883 -
Cla09g01879 180 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 26 143 - -
Cla09g01879 180 ProSiteProfiles LOB domain profile. 26 127 IPR004883 -
Cla09g01879 180 Coils Coil 106 126 - -
Cla09g01879 180 MobiDBLite consensus disorder prediction 157 180 - -
Cla09g01879 180 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 143 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla09g01879 Cla10g01326 CCT
Cla09g01879 Cla10g01326 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01879 Cla-Chr9:36482539 Cla11g01084 Cla-Chr11:21962719 7.73E-51 dispersed
Cla01g01323 Cla-Chr1:26581837 Cla09g01879 Cla-Chr9:36482539 3.91E-55 wgd
Cla10g01326 Cla-Chr10:28218498 Cla09g01879 Cla-Chr9:36482539 7.92E-74 wgd
Cla06g01688 Cla-Chr6:30476051 Cla09g01879 Cla-Chr9:36482539 1.21E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61777 PF03195 LOB 9.40E-40 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01879 - - csv:101216489 284.648