Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g01879 | ATGTTTGTCGATACGATTGCTAAGTGGGCAAAGAAAGATGTGAGGCAGCTTCAAACCAACTTCTGGAGGAACGAAGCATCTCAAAAGGCATGCAAATTCCTAAGAAGAAAATGCTTAGCCGATTGCATATTTGCGCCCTACTTTCCTCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTAAATTCTCTAGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGTTGTGTCGGGGCCATCTCCGCTCTACAAAGACAAGTCATTCGCTTGCAGAAAGAGCTCGATGCTACAAATGCTGATTTAGTGCGATATGCAAGCGGGGGCGCTCGCCCGCCCTCGCAATTTGGAAGAAGGGCAGCAACTGCCTCGATGACTCGCCATCATTCTGACCTGTCTTTTCTTTCTCCCTTGAGTAGTAATGATCATGATGATCCTTATTGCCATGATAAAGAGGAAGACAATTGA | 543 | 48.25 | MFVDTIAKWAKKDVRQLQTNFWRNEASQKACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISALQRQVIRLQKELDATNADLVRYASGGARPPSQFGRRAATASMTRHHSDLSFLSPLSSNDHDDPYCHDKEEDN | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 36482539 | 36486707 | - | ClCG09G019240.2 | Cla09g01879 | 281299 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g01879 | 180 | Pfam | Lateral organ boundaries (LOB) domain | 30 | 123 | IPR004883 | - | |
Cla09g01879 | 180 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 26 | 143 | - | - | |
Cla09g01879 | 180 | ProSiteProfiles | LOB domain profile. | 26 | 127 | IPR004883 | - | |
Cla09g01879 | 180 | Coils | Coil | 106 | 126 | - | - | |
Cla09g01879 | 180 | MobiDBLite | consensus disorder prediction | 157 | 180 | - | - | |
Cla09g01879 | 180 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 26 | 143 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla09g01879 | Cla10g01326 | CCT | |
Cla09g01879 | Cla10g01326 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g01879 | Cla-Chr9:36482539 | Cla11g01084 | Cla-Chr11:21962719 | 7.73E-51 | dispersed | |
Cla01g01323 | Cla-Chr1:26581837 | Cla09g01879 | Cla-Chr9:36482539 | 3.91E-55 | wgd | |
Cla10g01326 | Cla-Chr10:28218498 | Cla09g01879 | Cla-Chr9:36482539 | 7.92E-74 | wgd | |
Cla06g01688 | Cla-Chr6:30476051 | Cla09g01879 | Cla-Chr9:36482539 | 1.21E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61777 | PF03195 | LOB | 9.40E-40 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g01879 | - | - | csv:101216489 | 284.648 |