Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01885 ATGGGGTCCGGTAATGGGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTTGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCGCATGGCAAAGTGCACAAGGGGAAATATAAAGACCAAAATGTTGCAATTAAAATAATTCGGAAAGGTGAAACCCCAGAAGATATTGCCAAAACTGAGGCACGCTTTGCTCGGGAGGTTGCTATGTTATCCAGAGTTCAACACAAGAATCTTGCGAAGTTTATAGGTGCTTGCAAGGAGCCTATTATGGTGATAGTGACTGAGCTTCTTTTAGGCGGTACATTAAGGAAGTACCTGTTGAGTATAAGGCCAAGGTGCTTGGACTTCAATGAGGCAGTTGGCTTTGCACTTGATATTGCACGTGCAATGGAATGCTTGCATTCGCATGGCATCATTCACCGTGACCTCAAGCCTGAGAATTTGATCTTGACTGCAGACCACAAAACCGTTAAACTTGCTGATTTTGGTCTTGCTAGAGAAGAGTCGGTAACAGAGATGATGACGGCTGAAACTGGGACTTACAGATGGATGGCTCCGGAGCTATACAGTACAGTAACTTTACGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTACAGCTTTGGAATTGTATTCTGGGAGATTATCCGAAATAAGTTGCCTTTCGAAGGCATGTCAAATCTACAAGCAGCATATGCAGCTGCTTTTAAGAATTTACGACCGACTGCTGAGAACCTCCCACCGGATTTAGCACCTATTGTGACTTCCTGTTGGACAGAGGACCCAAACGATCGGCCTAACTTCAACCAAATCATACAAATGCTCTTGAAATGTCTATCCACCATTCCACAACCAGAGTATGTTGCACCACCACCATTGATGCACCCACCTGAGAATGCAGTTTTGCCACCAGAGTCTCCTGGAACAAGTTCTTTGATGGCAGCCACAAGACATGGCACGAGGGAAGTCCTGAACAGCGAGATGGAAGAGAAACCGAGTAGTTTCTTCTCGTGTTTCACTGCTCAGCTCTTGAAGAATATGGCAAGGTCTTGGATAATCGATAGTCGAACAATTGCAAGAAAAGTCAGGAACATCAGTCAATCTTCTTCACAAGTAATTAAAGATTGTGATGCGAAACGAGAATGTCCAAACTGTCACTTTATTATTGATAATACAGATGTTTCTCCTGAATGGCCTGGATTGCCTGCAGGAGTAAAGTTTGATCCAACTGATGAAGAAATAATGGAGCACTTAGCAGCCAAGTGCACTGTCGGAAACTTAAAGCCACATGCATTAATTGATGAATTCATTCCCACACTTGAAACAGACCAAGGAATCTGTTACACGCATCCAGAAAATCTCCCCGGTAATAACATTTTCCATTATTCAGGTGTTAGTAAAGATGGAAATGATGTCCATTTCTTCCATAAAACAAGCAATGCATATTCCACGGGTCAAAGGAAGCGTCGCAAGATTGAAAGTGAACATAATTCAAGCCTCGAACATTTTCGCTGGCACAAGACAGGTAAGACCAAGGCTGTGATAGAAAATGGTGTTCATAAGGGATGGAAGAAGATCTTCTCTCTGTATAGAAGTTCGAAGGGAGGCTCGAAGCCCCAAAAGTCTAATTGGGTGATACATCAATATCATTTGGGAACTGAAGAAGATGAGAAGGAAGGTGAATACGTTTTATCAAAGATTTCTTATCAGCAGCCAAAGCAATGTATTAAGAGTAGTGATAATATGCTCATTGTGGATTTTGATGCTATGCTGCATCAAACAAGTCCAAGAACTCCCAAGTCGAATCCTCCGATTCCACCTCGATCAGGAAAATCACTTGTCTCCAATGCTGTTGCTGACAACAGTCTGCCTCAGTCATTTGCAAAGGAAGAAGAGTCAACTCCGGAGGCATCTCGTGTTTCTTATCCAAATATTTCATCAGAGAACGACACAGGATACCATGATTGGTTGGCCGGAGAATCTCAGGATATAGATGATGTTGGATTACATTACTTGGAAGACAACTTATTGTGCAATGAAGTCCTAGATTCTAGTGCTTTTATAAGTAACAACCAAGTAAATCAAATGCCTTTCCCTCTCTCTGGTACCAACGCCTACCACGAGATTGCAAACGACAACGTTCCATGTGGAATTGCAGACCTTGTGAACCTTGAACTAGATACTCCACCTGATTTTCATCTGGCTAGAGCATTTTCGACTGGATCGATAGGATATGAACTGAATGTTGAAGCAAATTCTAATGAGAATGACATGTTACAATCTGACTTTTCTGCCCCCGAATCTTCCTTGAATTCACCATCTTTCATCATAAAACTCTTTGCAATCATTTGGCTTTCATTTGTATGGGGAATGCCATGCATGTCGCCTGTTGGAAGTCGGTTAAACTTCAAAATTCGAATGACACGTAACAACTTACGAACATATCTATCAGTTGTTTCTCACGGTCAAGTCATCGAATCAAGAACAACCGCAACGGATCCAGTGATGAAGCTAGTTTTTGCTCAAATTTTGTGTTAA 2568 42.17 MGSGNGLCSKEFDLDAKWLVDPKQIFVGPRIGEGAHGKVHKGKYKDQNVAIKIIRKGETPEDIAKTEARFAREVAMLSRVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDFNEAVGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIIRNKLPFEGMSNLQAAYAAAFKNLRPTAENLPPDLAPIVTSCWTEDPNDRPNFNQIIQMLLKCLSTIPQPEYVAPPPLMHPPENAVLPPESPGTSSLMAATRHGTREVLNSEMEEKPSSFFSCFTAQLLKNMARSWIIDSRTIARKVRNISQSSSQVIKDCDAKRECPNCHFIIDNTDVSPEWPGLPAGVKFDPTDEEIMEHLAAKCTVGNLKPHALIDEFIPTLETDQGICYTHPENLPGNNIFHYSGVSKDGNDVHFFHKTSNAYSTGQRKRRKIESEHNSSLEHFRWHKTGKTKAVIENGVHKGWKKIFSLYRSSKGGSKPQKSNWVIHQYHLGTEEDEKEGEYVLSKISYQQPKQCIKSSDNMLIVDFDAMLHQTSPRTPKSNPPIPPRSGKSLVSNAVADNSLPQSFAKEEESTPEASRVSYPNISSENDTGYHDWLAGESQDIDDVGLHYLEDNLLCNEVLDSSAFISNNQVNQMPFPLSGTNAYHEIANDNVPCGIADLVNLELDTPPDFHLARAFSTGSIGYELNVEANSNENDMLQSDFSAPESSLNSPSFIIKLFAIIWLSFVWGMPCMSPVGSRLNFKIRMTRNNLRTYLSVVSHGQVIESRTTATDPVMKLVFAQILC 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36549776 36562533 + ClCG09G019310.2 Cla09g01885 281305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01885 855 MobiDBLite consensus disorder prediction 635 656 - -
Cla09g01885 855 ProSiteProfiles Protein kinase domain profile. 25 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01885 855 SUPERFAMILY NAC domain 397 580 IPR036093 GO:0003677|GO:0006355
Cla09g01885 855 SUPERFAMILY Protein kinase-like (PK-like) 17 319 IPR011009 -
Cla09g01885 855 Gene3D NAC domain 420 585 IPR036093 GO:0003677|GO:0006355
Cla09g01885 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cla09g01885 855 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Cla09g01885 855 MobiDBLite consensus disorder prediction 603 623 - -
Cla09g01885 855 CDD STKc_MAP3K-like 31 285 - -
Cla09g01885 855 ProSitePatterns Protein kinases ATP-binding region signature. 31 56 IPR017441 GO:0005524
Cla09g01885 855 PANTHER SERINE-THREONINE PROTEIN KINASE 1 329 - -
Cla09g01885 855 SMART serkin_6 25 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g01885 855 ProSiteProfiles NAC domain profile. 411 580 IPR003441 GO:0003677|GO:0006355
Cla09g01885 855 Pfam No apical meristem (NAM) protein 412 561 IPR003441 GO:0003677|GO:0006355
Cla09g01885 855 PANTHER BNAA06G32000D PROTEIN 1 329 - -
Cla09g01885 855 PRINTS Tyrosine kinase catalytic domain signature 256 278 IPR001245 GO:0004672|GO:0006468
Cla09g01885 855 PRINTS Tyrosine kinase catalytic domain signature 213 235 IPR001245 GO:0004672|GO:0006468
Cla09g01885 855 PRINTS Tyrosine kinase catalytic domain signature 101 114 IPR001245 GO:0004672|GO:0006468
Cla09g01885 855 PRINTS Tyrosine kinase catalytic domain signature 139 157 IPR001245 GO:0004672|GO:0006468
Cla09g01885 855 Gene3D Transferase(Phosphotransferase) domain 1 106 296 - -
Cla09g01885 855 Pfam Protein tyrosine and serine/threonine kinase 29 285 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01888 Cla-Chr1:33686062 Cla09g01885 Cla-Chr9:36549776 3.49E-80 dispersed
Cla09g01885 Cla-Chr9:36549776 Cla10g02141 Cla-Chr10:37063622 8.34E-08 dispersed
Cla11g00177 Cla-Chr11:2109310 Cla09g01885 Cla-Chr9:36549776 5.87E-62 dispersed
Cla05g02330 Cla-Chr5:34897215 Cla09g01885 Cla-Chr9:36549776 3.27E-78 transposed
Cla10g01313 Cla-Chr10:28072770 Cla09g01885 Cla-Chr9:36549776 0 wgd
Cla06g01701 Cla-Chr6:30598998 Cla09g01885 Cla-Chr9:36549776 2.93E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61778 PF07714 PK_Tyr_Ser-Thr 2.70E-57 CL0016 Cla TF
80826 PF07714 PK_Tyr_Ser-Thr 2.70E-57 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01885 - - csv:101216003 697.967