Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g01903 | ATGGCGGCTTCTTCTTCTCTTTACTTTTTCTTGCTTCTTTTATCTCTTTCTTTCTTCTTGACTATGACTGCTCCAACTTCCAATTCCTCATTGCCTTTGTCTCTTCATCAACATCCTAATCTTGTTGTTCAAGAAGTTCAAAGGAGCATAAATGCATCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGATTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATTGGATTCGGTAAAAACGCCATCGGCGGCAAAAACGGCCGTTTCTACTTAGTCACAGACGCCGGCGACGACGACCCTCTCAACCCACGCCCGGGCACTCTCCGACATGCAGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAAGCAAGAACTAGTAATGAACTCATTCAAAACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCAGGTGGTCCATGCATAACGATCCATTACGCGACAAATATCATAATCCACGGCATCCACATTCACGATTGCAAGAGAGGGGGAAATGGTAATATACGGGACTCCCCACAGCACTCTGGTTGGTGGACTGTATCGGACGGTGATGGAGTGTCGATCTTTGGAGGAAAACATATCTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGCGATTCATGGGTCCACAGCTATTACCATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGTGATTCCTACACACAAGATAAAGACATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTCGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTACGCCATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGGAACAGATTTGCGGCGCCCTACAACCGCTTCCGGAAGGAGGTAACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAACGGCGCCTATTTCCGCCAGTCTGGCGCCGGCGCTGCTTCCAGCTATGCAAGAGCTTACAGCCTCAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACTGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG | 1245 | 49.64 | MAASSSLYFFLLLLSLSFFLTMTAPTSNSSLPLSLHQHPNLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGKNGRFYLVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC | 414 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 36705078 | 36708513 | + | ClCG09G019510.1 | Cla09g01903 | 281323 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g01903 | 414 | Pfam | Pectate lyase | 146 | 331 | IPR002022 | - | |
| Cla09g01903 | 414 | SMART | amb_all | 140 | 337 | IPR002022 | - | |
| Cla09g01903 | 414 | PANTHER | PECTATE LYASE 18-RELATED | 14 | 411 | IPR045032 | GO:0030570 | |
| Cla09g01903 | 414 | SUPERFAMILY | Pectin lyase-like | 49 | 409 | IPR011050 | - | |
| Cla09g01903 | 414 | Gene3D | - | 65 | 407 | IPR012334 | - | |
| Cla09g01903 | 414 | PRINTS | Pollen allergen Amb family signature | 88 | 105 | IPR018082 | - | |
| Cla09g01903 | 414 | PRINTS | Pollen allergen Amb family signature | 112 | 137 | IPR018082 | - | |
| Cla09g01903 | 414 | PRINTS | Pollen allergen Amb family signature | 148 | 164 | IPR018082 | - | |
| Cla09g01903 | 414 | PRINTS | Pollen allergen Amb family signature | 212 | 233 | IPR018082 | - | |
| Cla09g01903 | 414 | PRINTS | Pollen allergen Amb family signature | 292 | 311 | IPR018082 | - | |
| Cla09g01903 | 414 | PRINTS | Pollen allergen Amb family signature | 314 | 333 | IPR018082 | - | |
| Cla09g01903 | 414 | PRINTS | Pollen allergen Amb family signature | 356 | 380 | IPR018082 | - | |
| Cla09g01903 | 414 | PRINTS | Pollen allergen Amb family signature | 385 | 408 | IPR018082 | - | |
| Cla09g01903 | 414 | PANTHER | PECTATE LYASE | 14 | 411 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g00314 | Cla-Chr3:3763924 | Cla09g01903 | Cla-Chr9:36705078 | 0 | dispersed | |
| Cla06g00739 | Cla-Chr6:9598542 | Cla09g01903 | Cla-Chr9:36705078 | 0 | dispersed | |
| Cla07g00163 | Cla-Chr7:1854874 | Cla09g01903 | Cla-Chr9:36705078 | 0 | dispersed | |
| Cla08g00798 | Cla-Chr8:20385193 | Cla09g01903 | Cla-Chr9:36705078 | 5.18E-166 | dispersed | |
| Cla08g01714 | Cla-Chr8:29708349 | Cla09g01903 | Cla-Chr9:36705078 | 0 | dispersed | |
| Cla09g01903 | Cla-Chr9:36705078 | Cla10g01416 | Cla-Chr10:29217784 | 4.42E-162 | dispersed | |
| Cla09g01903 | Cla-Chr9:36705078 | Cla05g00372 | Cla-Chr5:3399550 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g01903 | K01728 | - | csv:101217834 | 778.089 |