Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01903 ATGGCGGCTTCTTCTTCTCTTTACTTTTTCTTGCTTCTTTTATCTCTTTCTTTCTTCTTGACTATGACTGCTCCAACTTCCAATTCCTCATTGCCTTTGTCTCTTCATCAACATCCTAATCTTGTTGTTCAAGAAGTTCAAAGGAGCATAAATGCATCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGATTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATTGGATTCGGTAAAAACGCCATCGGCGGCAAAAACGGCCGTTTCTACTTAGTCACAGACGCCGGCGACGACGACCCTCTCAACCCACGCCCGGGCACTCTCCGACATGCAGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAAGCAAGAACTAGTAATGAACTCATTCAAAACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCAGGTGGTCCATGCATAACGATCCATTACGCGACAAATATCATAATCCACGGCATCCACATTCACGATTGCAAGAGAGGGGGAAATGGTAATATACGGGACTCCCCACAGCACTCTGGTTGGTGGACTGTATCGGACGGTGATGGAGTGTCGATCTTTGGAGGAAAACATATCTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGCGATTCATGGGTCCACAGCTATTACCATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGTGATTCCTACACACAAGATAAAGACATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTCGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTACGCCATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGGAACAGATTTGCGGCGCCCTACAACCGCTTCCGGAAGGAGGTAACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAACGGCGCCTATTTCCGCCAGTCTGGCGCCGGCGCTGCTTCCAGCTATGCAAGAGCTTACAGCCTCAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACTGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG 1245 49.64 MAASSSLYFFLLLLSLSFFLTMTAPTSNSSLPLSLHQHPNLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGKNGRFYLVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC 414
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 36705078 36708513 + ClCG09G019510.1 Cla09g01903 281323
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01903 414 Pfam Pectate lyase 146 331 IPR002022 -
Cla09g01903 414 SMART amb_all 140 337 IPR002022 -
Cla09g01903 414 PANTHER PECTATE LYASE 18-RELATED 14 411 IPR045032 GO:0030570
Cla09g01903 414 SUPERFAMILY Pectin lyase-like 49 409 IPR011050 -
Cla09g01903 414 Gene3D - 65 407 IPR012334 -
Cla09g01903 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Cla09g01903 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Cla09g01903 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Cla09g01903 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Cla09g01903 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Cla09g01903 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Cla09g01903 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Cla09g01903 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Cla09g01903 414 PANTHER PECTATE LYASE 14 411 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00314 Cla-Chr3:3763924 Cla09g01903 Cla-Chr9:36705078 0 dispersed
Cla06g00739 Cla-Chr6:9598542 Cla09g01903 Cla-Chr9:36705078 0 dispersed
Cla07g00163 Cla-Chr7:1854874 Cla09g01903 Cla-Chr9:36705078 0 dispersed
Cla08g00798 Cla-Chr8:20385193 Cla09g01903 Cla-Chr9:36705078 5.18E-166 dispersed
Cla08g01714 Cla-Chr8:29708349 Cla09g01903 Cla-Chr9:36705078 0 dispersed
Cla09g01903 Cla-Chr9:36705078 Cla10g01416 Cla-Chr10:29217784 4.42E-162 dispersed
Cla09g01903 Cla-Chr9:36705078 Cla05g00372 Cla-Chr5:3399550 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01903 K01728 - csv:101217834 778.089