Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01916 ATGTCATTAGGAGTGGAAAGCAGAGCACTTACCGGAGGTCTTTACGGCGCCGGACCATGGCAGACTGCCCACGCTACTTTCTACGGCGGCAATGACGCCTCCGGCACAATGGGCGGGGCGTGCGGTTATGGCAACTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGCTCAGCACAGCTCTGTTCAACGACGGCTACAGCTGCGGGGCTTGTTTTGAGATCAAGTGCGTGAATGACCCACAATGGTGCCATGCCGGTAACCCCTCCATCTTTGTCACAGCCACCAATTTTTGTCCTCCCAATTACGCTCTACCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTTGACCTCTCCATGCCCATGTTTCTTAAAATCGCCCAATATCGCGCGGGCATCGTCCCCGTCTCCTTTCGCAGGGTGGCATGTCGGAGGGAAGGAGGGATGAGGTTTACGATCAATGGATTCAAATATTTCAATTTGGTATTGATAACCAATGTGGGTGGAGCAGGGGATATTGTGAGTGTGAGCATCAAGGGGTCGAAGACAGGGTGGATGAGTATGACACGTAATTGGGGTCAAAACTGGCAGTCAAATACTGTTTTGAAAACTTCACACCAATCACAACCTTCGAGCATTCAAGATCCGAAAATTGAATCCAAAGTAGCGGAGCTCGGAGGACGGAGTTTTGTTGATTTAGACTCTGAAGTTATGGAGGAGCAGTTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTAAATGAAAATGCTTCTTCATCTGAAGATGCTTCATTGGATTTGTCATTCTCTGAGGATGGGAGAAGTGGCACTTTTGCCATTGGTGATGATCATTTTCCAGCATCTCTTCTGGATCTCCCTTGTGTAGTGGAATCCTATAAAACATACGATGATACTGTTCTAATCAAAACTGCAGACATTGGCCAGATGATCATGGTTAGAGAACCGGGTGACCCTGCTCCAGAGTCGACTGAGTATAGGCATGGTTTGACCCCTCCTATGAGGGATGCTCGAAAACGTAGATTTCGAAGAGAGCCAGATTTAAATCCTGAGCTTGTACGGCGAGTGGAGAAAGATTTACTAAACATCATGGCAGGAGGAACTACCGAAAATGCAGATATCCTTGATACTTTATTGGCTGAGCAACAGGATGATAGAGATGAGAATCCTCATCATGCAAGTGCAAAGCCTGCATCCGCACCTGCAGCAAAGCCTGATGTAATGGAAACTGAAACAAATGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGATTAG 1338 48.28 MSLGVESRALTGGLYGAGPWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRREGGMRFTINGFKYFNLVLITNVGGAGDIVSVSIKGSKTGWMSMTRNWGQNWQSNTVLKTSHQSQPSSIQDPKIESKVAELGGRSFVDLDSEVMEEQFVLRVPPSVAERIERLLNENASSSEDASLDLSFSEDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKTADIGQMIMVREPGDPAPESTEYRHGLTPPMRDARKRRFRREPDLNPELVRRVEKDLLNIMAGGTTENADILDTLLAEQQDDRDENPHHASAKPASAPAAKPDVMETETNVGEPERSDSDDSDHSID 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36830486 36836600 + ClCG09G019640.2 Cla09g01916 281336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01916 445 SMART TAFII55_N_2 242 386 IPR006751 GO:0005669|GO:0006367
Cla09g01916 445 Gene3D - 13 148 IPR036908 -
Cla09g01916 445 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Cla09g01916 445 PRINTS Expansin signature 77 88 IPR002963 GO:0009664
Cla09g01916 445 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Cla09g01916 445 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Cla09g01916 445 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Cla09g01916 445 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Cla09g01916 445 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Cla09g01916 445 PRINTS Expansin signature 50 64 IPR002963 GO:0009664
Cla09g01916 445 MobiDBLite consensus disorder prediction 396 445 - -
Cla09g01916 445 PRINTS Expansin/Lol pI family signature 19 34 IPR007118 GO:0005576
Cla09g01916 445 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Cla09g01916 445 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Cla09g01916 445 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Cla09g01916 445 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Cla09g01916 445 SMART dpbb_1 55 142 IPR007112 -
Cla09g01916 445 Pfam TAFII55 protein conserved region 242 377 IPR006751 GO:0005669|GO:0006367
Cla09g01916 445 PANTHER EXPANSIN-A6 6 209 - -
Cla09g01916 445 MobiDBLite consensus disorder prediction 426 445 - -
Cla09g01916 445 MobiDBLite consensus disorder prediction 344 358 - -
Cla09g01916 445 Pfam Lytic transglycolase 55 142 IPR009009 -
Cla09g01916 445 Gene3D - 153 218 IPR036749 -
Cla09g01916 445 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 152 IPR007112 -
Cla09g01916 445 PANTHER EXPANSIN-A15 6 209 IPR002963 GO:0009664
Cla09g01916 445 SUPERFAMILY Barwin-like endoglucanases 19 170 IPR036908 -
Cla09g01916 445 CDD TAF7 243 389 IPR006751 GO:0005669|GO:0006367
Cla09g01916 445 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 235 IPR007117 -
Cla09g01916 445 MobiDBLite consensus disorder prediction 329 358 - -
Cla09g01916 445 Pfam Expansin C-terminal domain 153 205 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00138 Cla-Chr3:1443303 Cla09g01916 Cla-Chr9:36830486 4.22E-129 dispersed
Cla07g00313 Cla-Chr7:3591610 Cla09g01916 Cla-Chr9:36830486 8.71E-126 dispersed
Cla09g01916 Cla-Chr9:36830486 Cla05g02431 Cla-Chr5:35815273 1.05E-108 dispersed
Cla07g00704 Cla-Chr7:18775024 Cla09g01916 Cla-Chr9:36830486 1.49E-76 transposed
Cla02g01959 Cla-Chr2:34678805 Cla09g01916 Cla-Chr9:36830486 1.49E-126 wgd
Cla04g00803 Cla-Chr4:23068149 Cla09g01916 Cla-Chr9:36830486 1.79E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01916 - - csv:101216168 419.083