Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01925 ATGAATGCAGAGGACATTCAGCCTCTTGTGTGTGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGGGCAGTCTTCCCTAGCATTGTTGGCCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATGCTTATGTTGGCGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATATGGCATCACACCTTCTATAACGAGCTTCGTGTCGCTCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACCCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTGTATGCCAGTGGTCGAACCACCGGGGTTGGTTTCTATTATGTAGGCATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACAGTCCCCATCTATGAGGGCTATGCTCTCCCACATGCCATTCTTCGACTCGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTCACAGAGCGTGGTTATTCATTCACTACCACAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCCCTTGACTATGAGCAAGAGCTTGAAACATCCAAAACCAGTTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATTGGCGCCGAGCGTTTTAGATGCCCGGAAGTTCTTTTCCAGCCATCCATGATAGGAATGGAAGCTGCAGGTATTCATGAAACCACATATAATTCCATCATGAAGTGCGATGTGGATATCAGGAAGGATCTGTATGGAAACATTGTCCTCTCTGGTGGTTCGACCATGTTTTCGGGCATTGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATACAGTGTCTGGATTGGTGGTTCTATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA 1152 46.53 MNAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVGFYYVGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36902101 36904666 - ClCG09G019770.2 Cla09g01925 281345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01925 383 PANTHER ACTIN 3 382 IPR004000 -
Cla09g01925 383 ProSitePatterns Actins signature 2. 364 372 IPR004001 -
Cla09g01925 383 SUPERFAMILY Actin-like ATPase domain 158 383 IPR043129 -
Cla09g01925 383 Gene3D - 9 377 - -
Cla09g01925 383 PRINTS Actin signature 116 129 IPR004000 -
Cla09g01925 383 PRINTS Actin signature 141 160 IPR004000 -
Cla09g01925 383 PRINTS Actin signature 244 260 IPR004000 -
Cla09g01925 383 PRINTS Actin signature 50 61 IPR004000 -
Cla09g01925 383 PRINTS Actin signature 62 84 IPR004000 -
Cla09g01925 383 PRINTS Actin signature 27 36 IPR004000 -
Cla09g01925 383 SMART actin_3 6 383 IPR004000 -
Cla09g01925 383 ProSitePatterns Actins signature 1. 54 64 IPR004001 -
Cla09g01925 383 Gene3D Actin; Chain A, domain 4 188 279 - -
Cla09g01925 383 PANTHER ACTIN-97 3 382 - -
Cla09g01925 383 ProSitePatterns Actins and actin-related proteins signature. 105 117 IPR020902 -
Cla09g01925 383 Gene3D - 139 346 - -
Cla09g01925 383 SUPERFAMILY Actin-like ATPase domain 5 152 IPR043129 -
Cla09g01925 383 Pfam Actin 4 383 IPR004000 -
Cla09g01925 383 CDD NBD_sugar-kinase_HSP70_actin 9 189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01925 Cla-Chr9:36902101 Cla10g01670 Cla-Chr10:32418651 0 dispersed
Cla02g01971 Cla-Chr2:34771151 Cla09g01925 Cla-Chr9:36902101 0 wgd
Cla04g00809 Cla-Chr4:23142506 Cla09g01925 Cla-Chr9:36902101 0 wgd
Cla07g00316 Cla-Chr7:3635791 Cla09g01925 Cla-Chr9:36902101 2.89E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01925 K10355 - csv:101220611 733.406