Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01940 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAACTCAGCTACAAGGAAGTGGCTGTGAGACAAATAATGCTCAACACCTTCCACCTCCGGCACCGCCAACTAGCGGTGGCGGCGGTAGTGGACCTGGCTCGATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTGGCGAAGATACCACAACCGGAAGCCGGGTTAAAATGTCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACGTGCCGACGGTACTGGACGAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGCAATAGGTCAAAATCTCCAGGGGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGACATAATTAGCCAACAACTGGGTCATCATCCTCCTCCTCCAACAACCCATTTGCCCTTTTTTTCTCAAAATTTACATCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCCCTTCAAATTCCTTCACTCCCATCATCAGCTGGAGGAGTTGAATCCTCAATTTTATCAAGTGGAATTACAGATCATCATCAATGGAAAATCCCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATCAAGATCATCATCATCATCAACAAGGAGCCGATTTTTCAAATTACCAGCGGTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAATAATAGCATGAAAATCTTGGAGGAGACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTAGTACTACAACAACAACAACACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGGGTTGA 1080 42.13 MVFSSVPVFLDPPNWPSQQPTQLQGSGCETNNAQHLPPPAPPTSGGGGSGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLGHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGVESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMADQDHHHHQQGADFSNYQRLSKPLLESGFNTTTTTNHHQLENINNNNNNSMKILEETQGINNLSRNFLGIQPNDDQFWNSSTTTTTTPGNIAWSSDQISDHFNSTSSTTHLLG 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36993735 36995816 - ClCG09G019930.2 Cla09g01940 281360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01940 359 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Cla09g01940 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 308 IPR045174 GO:0003700|GO:0006355
Cla09g01940 359 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 9 308 - -
Cla09g01940 359 MobiDBLite consensus disorder prediction 134 155 - -
Cla09g01940 359 MobiDBLite consensus disorder prediction 1 59 - -
Cla09g01940 359 Pfam Dof domain, zinc finger 75 129 IPR003851 GO:0003677|GO:0006355
Cla09g01940 359 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Cla09g01940 359 MobiDBLite consensus disorder prediction 11 33 - -
Cla09g01940 359 MobiDBLite consensus disorder prediction 116 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01940 - - - csv:101212561 512.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01940 Cla-Chr9:36993735 Cla10g00793 Cla-Chr10:16256294 5.15E-33 dispersed
Cla10g02000 Cla-Chr10:35845261 Cla09g01940 Cla-Chr9:36993735 6.39E-50 wgd
Cla02g01976 Cla-Chr2:34830258 Cla09g01940 Cla-Chr9:36993735 2.79E-39 wgd
Cla04g00818 Cla-Chr4:23231374 Cla09g01940 Cla-Chr9:36993735 4.56E-41 wgd
Cla07g00304 Cla-Chr7:3441324 Cla09g01940 Cla-Chr9:36993735 2.37E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla03g00724 CCT 17 179 C2C2-Dof Transcription Factor Family AT1G29160 58.0 8.1e-45 177.2
Cla01g02318 CCT 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.8e-40 160.6
Cla01g00159 . 17 104 C2C2-Dof Transcription Factor Family AT1G64620 75.8 7.3e-37 151.8
Cla03g00724 CCT 17 179 C2C2-Dof Transcription Factor Family AT2G34140 55.6 2.5e-43 172.2
Cla10g02000 CCT,ECH 64 196 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Cla09g01940 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.1e-38 156.8
Cla03g00153 CCT,ECH 93 167 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.2e-37 152.1
Cla06g01588 CCT,ECH 185 536 C2C2-Dof Transcription Factor Family AT3G47500 53.4 6.1e-89 325.1
Cla01g00159 . 17 102 C2C2-Dof Transcription Factor Family AT4G24060 79.2 9.9e-39 157.9
Cla10g01453 . 212 591 C2C2-Dof Transcription Factor Family AT5G39660 53.7 2.8e-81 299.7
Cla10g02000 CCT,ECH 64 196 C2C2-Dof Transcription Factor Family AT5G02460 67.3 1.4e-39 161.0
Cla03g00153 CCT,ECH 94 167 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.7e-38 155.6
Cla09g01940 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.4e-36 151.0
Cla10g02000 CCT,ECH 117 199 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.0e-37 153.7
Cla02g01976 CCT,ECH 195 343 C2C2-Dof Transcription Factor Family AT3G55370 54.0 5.9e-37 152.1
Cla04g00818 CCT,ECH 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.3e-36 151.0
Cla06g01522 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.3 1.5e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61780 PF02701 zf-Dof 4.60E-31 No_clan Cla TF