Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01940 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAACTCAGCTACAAGGAAGTGGCTGTGAGACAAATAATGCTCAACACCTTCCACCTCCGGCACCGCCAACTAGCGGTGGCGGCGGTAGTGGACCTGGCTCGATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTGGCGAAGATACCACAACCGGAAGCCGGGTTAAAATGTCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACGTGCCGACGGTACTGGACGAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGCAATAGGTCAAAATCTCCAGGGGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGACATAATTAGCCAACAACTGGGTCATCATCCTCCTCCTCCAACAACCCATTTGCCCTTTTTTTCTCAAAATTTACATCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCCCTTCAAATTCCTTCACTCCCATCATCAGCTGGAGGAGTTGAATCCTCAATTTTATCAAGTGGAATTACAGATCATCATCAATGGAAAATCCCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATCAAGATCATCATCATCATCAACAAGGAGCCGATTTTTCAAATTACCAGCGGTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAATAATAGCATGAAAATCTTGGAGGAGACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTAGTACTACAACAACAACAACACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGGGTTGA 1080 42.13 MVFSSVPVFLDPPNWPSQQPTQLQGSGCETNNAQHLPPPAPPTSGGGGSGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLGHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGVESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMADQDHHHHQQGADFSNYQRLSKPLLESGFNTTTTTNHHQLENINNNNNNSMKILEETQGINNLSRNFLGIQPNDDQFWNSSTTTTTTPGNIAWSSDQISDHFNSTSSTTHLLG 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36993735 36995816 - ClCG09G019930.2 Cla09g01940 281360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01940 359 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Cla09g01940 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 308 IPR045174 GO:0003700|GO:0006355
Cla09g01940 359 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 9 308 - -
Cla09g01940 359 MobiDBLite consensus disorder prediction 134 155 - -
Cla09g01940 359 MobiDBLite consensus disorder prediction 1 59 - -
Cla09g01940 359 Pfam Dof domain, zinc finger 75 129 IPR003851 GO:0003677|GO:0006355
Cla09g01940 359 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Cla09g01940 359 MobiDBLite consensus disorder prediction 11 33 - -
Cla09g01940 359 MobiDBLite consensus disorder prediction 116 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01940 Cla-Chr9:36993735 Cla10g00793 Cla-Chr10:16256294 5.15E-33 dispersed
Cla10g02000 Cla-Chr10:35845261 Cla09g01940 Cla-Chr9:36993735 6.39E-50 wgd
Cla02g01976 Cla-Chr2:34830258 Cla09g01940 Cla-Chr9:36993735 2.79E-39 wgd
Cla04g00818 Cla-Chr4:23231374 Cla09g01940 Cla-Chr9:36993735 4.56E-41 wgd
Cla07g00304 Cla-Chr7:3441324 Cla09g01940 Cla-Chr9:36993735 2.37E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61780 PF02701 zf-Dof 4.60E-31 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01940 - - csv:101212561 512.301