Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01959 ATGGAGAAGGCAGCTGGTAGAATGTTTGAGAAGGCAAAGCCATATTTGGGAGCAATTGCATTAAGGTTTGCTTCAGCAGGAATGTCAATTATTTCAAAGGCTGCTCTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTACTCTATTGGTGCCATTGTTGTTGCTCCTTTTGCTTTTGTATTGGATAGGAAAATAAGACCAAAGATGACTCTCCCGATCTTCGCCAAGATTCTTCTCCTTGGTTTACTCGAGCCTGTAATAGCCCAGAGCTTGATTTACTCTGCTACTAAATACACAACTGCTACTTTTGCAACTGCCATGTGCAATATTCTTCCTGCCTTTGCATTTCTAATGGCTTGGATTTGTAGAATGGAGAAGGTGAACATTAGAAGATTAAGAAGCCAGGCAAAGATTTTAGGGACTTTAGTTACAGTTGGAGGAGCAATGATGATGGCTCTTATAAAAGGGCCTTTATTGAGTTTGCCTTGGACCAAACAAAATTTCAATAATCCTCATTCTTATTCCACTCTTCCAAATAACCAACAACCTCTTAAGGCTGCCATTGTTATCACCATTTCAAGTATTTGTTCCTCAGCCTTCACCATTCTTCTGGCACATACAATAAGAACATACCCAGCTGAGCTCACACTAACAACATTCATATGTTTGGCTGGAGCTGTGGAAAGTACTATTTTAGCCTTAGCATTTGAATGGGACAATCCATCTGCATGGGCTTTACATGCAGATTCCATACTCTTGGCTGCCCTCTATGGTGTAAGAGTAGTGGTGAAGTTAAAAGGACCTGTGTTTGTAACTGCATTCAATCCTCTCAGCATGGTCATAGTTGCCATAATTAGTTCATTCATATTCTCCGAGACACTGCGCTTAGGAAGCATGGTCATAGTTGCCATAATTAGTTCATTCATATTCTCCGAGACACTGCGCTTAGGAAGGGTCATTGGAGCAGTTGTGATAATTATAGGCCTTTACTTGGTTTTGTGGGGCAAGAGCAAAGATAAACTTCCATTCAAAGTGGAGAATGACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGAATTGCCAATTTCACTCCAAGACTCAACAACCACAAACCAGCAGCTGAAGGCTTTAGATCAACAATAA 1176 38.69 MEKAAGRMFEKAKPYLGAIALRFASAGMSIISKAALNQGMNQLVTIVYRYSIGAIVVAPFAFVLDRKIRPKMTLPIFAKILLLGLLEPVIAQSLIYSATKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRRLRSQAKILGTLVTVGGAMMMALIKGPLLSLPWTKQNFNNPHSYSTLPNNQQPLKAAIVITISSICSSAFTILLAHTIRTYPAELTLTTFICLAGAVESTILALAFEWDNPSAWALHADSILLAALYGVRVVVKLKGPVFVTAFNPLSMVIVAIISSFIFSETLRLGSMVIVAIISSFIFSETLRLGRVIGAVVIIIGLYLVLWGKSKDKLPFKVENDNNNNNNNNNNNNNNNNNNELPISLQDSTTTNQQLKALDQQ 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37161261 37165080 + ClCG09G020120.1 Cla09g01959 281379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01959 391 MobiDBLite consensus disorder prediction 349 376 - -
Cla09g01959 391 PANTHER WAT1-RELATED PROTEIN 301 352 - -
Cla09g01959 391 PANTHER WAT1-RELATED PROTEIN 10 303 - -
Cla09g01959 391 PANTHER WAT1-RELATED PROTEIN 301 352 IPR030184 GO:0016021|GO:0022857
Cla09g01959 391 PANTHER WAT1-RELATED PROTEIN 10 303 IPR030184 GO:0016021|GO:0022857
Cla09g01959 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Cla09g01959 391 MobiDBLite consensus disorder prediction 348 376 - -
Cla09g01959 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 302 341 - -
Cla09g01959 391 Pfam EamA-like transporter family 14 154 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01959 Cla-Chr9:37161261 Cla09g01961 Cla-Chr9:37221332 1.30E-127 dispersed
Cla09g01959 Cla-Chr9:37161261 Cla09g01960 Cla-Chr9:37193819 1.48E-94 tandem
Cla01g01749 Cla-Chr1:32396258 Cla09g01959 Cla-Chr9:37161261 4.97E-33 transposed
Cla04g00834 Cla-Chr4:23381317 Cla09g01959 Cla-Chr9:37161261 1.11E-99 wgd
Cla07g00295 Cla-Chr7:3279749 Cla09g01959 Cla-Chr9:37161261 3.82E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01959 - - csv:101208640 561.222