Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01961 ATGGAGCATCCCGCCGGAATGTTGAATCAGGCAAAGCCATTTATTGCAGTGATTCTTCAGCAATTCATCTCTGCCGGAATGGTCATCATTTCCAAGTTGGCTCTCAACCAAGGACTCAACCAGCACGTTTTAGTCGTCTACCGCTACACCATTGCTACCATTGTCGTCGCTCCGTTCGCTTTCATCTTCGAGAGGAAAGTGAGACCCAAGATGACTTGGTCCATTTTTGGGAAGGTTGTGTTACTGGGACTATTGGAGCCTGCACTAGACCAAAACTTGTATTATACAGGCATGAAGTACACTACAGCAACCTTTGCATCCGCTATGACTAATATGGTCCCTGGCCTCGTCTTCCTCATGGCTTGGCTTGTTCGGCTTGAGAAGGTTGACGTAAGGCAGGTGTCGAGCCAGGCGAAGATATTAGGAACAGTGGTGGCAGTGGGAGGGGCGATGATAATGACTCTGGTAAGAGGACCAATCTTGAATCTGCCATGGACAAATCACAACCTCCATGACCATTCTGCAGCTGCAACTAACCAGCAAGATCTTCTCAAGGGTTCTCTCATGATCACTATTGGTTGTATTCTTTGGTCTGTTTTCAATGTTCTTCAGGCAATTACAGTAAAAGTATACCCAGCACAACTCTCCTTAACAGCTTTGATATGCTTCACCGGCGCCATACAAGCCTCAGTAATAGCTTTCGCAATGGAAGGGCACAAACCTGCGGCCTGGTCATTACATTTAGATTCAACCCTCTTAGCTCCTTTGTATAGTGGAATCATGTCTTCAGGGGTTTCATATACTATCCAAGCAGCAGTAATGAAAAGGAAAGGGCCAGTTTTTGCAAGTACATTTAGTCCCCTGAGCATGATTATTGTTGCAATCATTAGTTCATTCGCATTATCCGAGATATTATACTTTGGAAGGGTTATTGGAGCAGCTGTAATTATTACAGGCCTTTATTTGGTTCTGTGGGGTAAAATCAAGGATCACGCTCTATACAAATCAGATAGTGAGAAGATGGCCCCACCAGATCAGAAACTGACTGCCATAACTGACAAACCTAAGACTTCAGATAAAGAACTAGGAGTTGATCTTGCTAGGATAAAAACAGTGGATGATTCTGTTTGA 1131 44.3 MEHPAGMLNQAKPFIAVILQQFISAGMVIISKLALNQGLNQHVLVVYRYTIATIVVAPFAFIFERKVRPKMTWSIFGKVVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMVPGLVFLMAWLVRLEKVDVRQVSSQAKILGTVVAVGGAMIMTLVRGPILNLPWTNHNLHDHSAAATNQQDLLKGSLMITIGCILWSVFNVLQAITVKVYPAQLSLTALICFTGAIQASVIAFAMEGHKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAVMKRKGPVFASTFSPLSMIIVAIISSFALSEILYFGRVIGAAVIITGLYLVLWGKIKDHALYKSDSEKMAPPDQKLTAITDKPKTSDKELGVDLARIKTVDDSV 376
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 37221332 37225316 + ClCG09G020140.1 Cla09g01961 281381
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01961 376 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020|GO:0016021
Cla09g01961 376 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020|GO:0016021
Cla09g01961 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cla09g01961 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 328 - -
Cla09g01961 376 PANTHER WAT1-RELATED PROTEIN 9 336 IPR030184 GO:0016021|GO:0022857
Cla09g01961 376 PANTHER WAT1-RELATED PROTEIN 9 336 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01749 Cla-Chr1:32396258 Cla09g01961 Cla-Chr9:37221332 2.02E-15 dispersed
Cla06g00834 Cla-Chr6:12162020 Cla09g01961 Cla-Chr9:37221332 1.70E-79 dispersed
Cla07g00295 Cla-Chr7:3279749 Cla09g01961 Cla-Chr9:37221332 4.86E-136 dispersed
Cla07g00296 Cla-Chr7:3322165 Cla09g01961 Cla-Chr9:37221332 5.87E-135 dispersed
Cla09g01959 Cla-Chr9:37161261 Cla09g01961 Cla-Chr9:37221332 1.30E-127 dispersed
Cla09g01961 Cla-Chr9:37221332 Cla10g01563 Cla-Chr10:31033344 2.18E-109 dispersed
Cla09g01960 Cla-Chr9:37193819 Cla09g01961 Cla-Chr9:37221332 1.53E-110 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01961 - - csv:101222430 687.182