Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g01961 | ATGGAGCATCCCGCCGGAATGTTGAATCAGGCAAAGCCATTTATTGCAGTGATTCTTCAGCAATTCATCTCTGCCGGAATGGTCATCATTTCCAAGTTGGCTCTCAACCAAGGACTCAACCAGCACGTTTTAGTCGTCTACCGCTACACCATTGCTACCATTGTCGTCGCTCCGTTCGCTTTCATCTTCGAGAGGAAAGTGAGACCCAAGATGACTTGGTCCATTTTTGGGAAGGTTGTGTTACTGGGACTATTGGAGCCTGCACTAGACCAAAACTTGTATTATACAGGCATGAAGTACACTACAGCAACCTTTGCATCCGCTATGACTAATATGGTCCCTGGCCTCGTCTTCCTCATGGCTTGGCTTGTTCGGCTTGAGAAGGTTGACGTAAGGCAGGTGTCGAGCCAGGCGAAGATATTAGGAACAGTGGTGGCAGTGGGAGGGGCGATGATAATGACTCTGGTAAGAGGACCAATCTTGAATCTGCCATGGACAAATCACAACCTCCATGACCATTCTGCAGCTGCAACTAACCAGCAAGATCTTCTCAAGGGTTCTCTCATGATCACTATTGGTTGTATTCTTTGGTCTGTTTTCAATGTTCTTCAGGCAATTACAGTAAAAGTATACCCAGCACAACTCTCCTTAACAGCTTTGATATGCTTCACCGGCGCCATACAAGCCTCAGTAATAGCTTTCGCAATGGAAGGGCACAAACCTGCGGCCTGGTCATTACATTTAGATTCAACCCTCTTAGCTCCTTTGTATAGTGGAATCATGTCTTCAGGGGTTTCATATACTATCCAAGCAGCAGTAATGAAAAGGAAAGGGCCAGTTTTTGCAAGTACATTTAGTCCCCTGAGCATGATTATTGTTGCAATCATTAGTTCATTCGCATTATCCGAGATATTATACTTTGGAAGGGTTATTGGAGCAGCTGTAATTATTACAGGCCTTTATTTGGTTCTGTGGGGTAAAATCAAGGATCACGCTCTATACAAATCAGATAGTGAGAAGATGGCCCCACCAGATCAGAAACTGACTGCCATAACTGACAAACCTAAGACTTCAGATAAAGAACTAGGAGTTGATCTTGCTAGGATAAAAACAGTGGATGATTCTGTTTGA | 1131 | 44.3 | MEHPAGMLNQAKPFIAVILQQFISAGMVIISKLALNQGLNQHVLVVYRYTIATIVVAPFAFIFERKVRPKMTWSIFGKVVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMVPGLVFLMAWLVRLEKVDVRQVSSQAKILGTVVAVGGAMIMTLVRGPILNLPWTNHNLHDHSAAATNQQDLLKGSLMITIGCILWSVFNVLQAITVKVYPAQLSLTALICFTGAIQASVIAFAMEGHKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAVMKRKGPVFASTFSPLSMIIVAIISSFALSEILYFGRVIGAAVIITGLYLVLWGKIKDHALYKSDSEKMAPPDQKLTAITDKPKTSDKELGVDLARIKTVDDSV | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 37221332 | 37225316 | + | ClCG09G020140.1 | Cla09g01961 | 281381 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g01961 | 376 | Pfam | EamA-like transporter family | 185 | 324 | IPR000620 | GO:0016020|GO:0016021 | |
| Cla09g01961 | 376 | Pfam | EamA-like transporter family | 14 | 153 | IPR000620 | GO:0016020|GO:0016021 | |
| Cla09g01961 | 376 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 155 | - | - | |
| Cla09g01961 | 376 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 249 | 328 | - | - | |
| Cla09g01961 | 376 | PANTHER | WAT1-RELATED PROTEIN | 9 | 336 | IPR030184 | GO:0016021|GO:0022857 | |
| Cla09g01961 | 376 | PANTHER | WAT1-RELATED PROTEIN | 9 | 336 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01749 | Cla-Chr1:32396258 | Cla09g01961 | Cla-Chr9:37221332 | 2.02E-15 | dispersed | |
| Cla06g00834 | Cla-Chr6:12162020 | Cla09g01961 | Cla-Chr9:37221332 | 1.70E-79 | dispersed | |
| Cla07g00295 | Cla-Chr7:3279749 | Cla09g01961 | Cla-Chr9:37221332 | 4.86E-136 | dispersed | |
| Cla07g00296 | Cla-Chr7:3322165 | Cla09g01961 | Cla-Chr9:37221332 | 5.87E-135 | dispersed | |
| Cla09g01959 | Cla-Chr9:37161261 | Cla09g01961 | Cla-Chr9:37221332 | 1.30E-127 | dispersed | |
| Cla09g01961 | Cla-Chr9:37221332 | Cla10g01563 | Cla-Chr10:31033344 | 2.18E-109 | dispersed | |
| Cla09g01960 | Cla-Chr9:37193819 | Cla09g01961 | Cla-Chr9:37221332 | 1.53E-110 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g01961 | - | - | csv:101222430 | 687.182 |