Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01964 ATGCCAATCCATAAATTTTCAATCGGATCACCTGGAGAGGCGAGCCAACCGGACGCGATCAAGGCCGCATTTGCCGAATTCTTCTCCATGATCATCTTTGTTTTCGCCGGACAAGGATCCGGATTGGCTTTTGATAAGTTAACGGACGGTGGATCTGCGACGCCGTCGGGGCTGATAGTGGCATCTCTGGCTCATGCTTTTGCGTTATTTGTGGCGGTCTCCGTCGGAGCTAATATCTCCGGTGGCCATGTAAATCCGGCAGTTACATTTGGTGCGCTCATTGGTGGAAACATATCGTTCTTTAGAAGTATAATGTATTGGTTCGCTCAATTGCTTGGTTCTGTTGTTGCGTGCTTCCTTCTCAAGTTTGCGACTGGTGGAAAGGTAACACCAGCATTTGCCTTATCATCAGGAGTTTCTGTGTGGAATGCATTTATATTTGAGGCAGTGATGACTTTTGGATTAGTATATACAGTGTATGCAACAGCAGTAGATCCAAAGAGGGAGAATTTGGGCATAATTGCCCCAATTTCTATTGGTTTCATTGTTGGTGCAAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTAATCACCTGGTCATGGACCCATCACTGGGTCTACTGGCTTGGTCCAATGGCTGGTGCAGCCATTGCTACCATTGTCTATGACACTCTCTTTATCTCAGACTCCATGCATGATCCTCTTACTCAGTATAATGATTTCTAG 762 46.46 MPIHKFSIGSPGEASQPDAIKAAFAEFFSMIIFVFAGQGSGLAFDKLTDGGSATPSGLIVASLAHAFALFVAVSVGANISGGHVNPAVTFGALIGGNISFFRSIMYWFAQLLGSVVACFLLKFATGGKVTPAFALSSGVSVWNAFIFEAVMTFGLVYTVYATAVDPKRENLGIIAPISIGFIVGANILVGGAFDGASMNPAVSFGPAVITWSWTHHWVYWLGPMAGAAIATIVYDTLFISDSMHDPLTQYNDF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37240084 37242872 - ClCG09G020170.1 Cla09g01964 281384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01964 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cla09g01964 253 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla09g01964 253 PANTHER AQUAPORIN TIP1-1 1 247 - -
Cla09g01964 253 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla09g01964 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla09g01964 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla09g01964 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla09g01964 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla09g01964 253 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla09g01964 253 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla09g01964 253 SUPERFAMILY Aquaporin-like 16 241 IPR023271 -
Cla09g01964 253 PANTHER AQUAPORIN-8 1 247 IPR034294 -
Cla09g01964 253 Gene3D Glycerol uptake facilitator protein. 5 251 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01451 Cla-Chr1:29009237 Cla09g01964 Cla-Chr9:37240084 3.32E-92 dispersed
Cla09g01964 Cla-Chr9:37240084 Cla10g01892 Cla-Chr10:34818950 2.39E-107 dispersed
Cla09g01964 Cla-Chr9:37240084 Cla04g00933 Cla-Chr4:24297743 2.86E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01964 K09873 - csv:101222909 475.707