Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01967 ATGGAGATTACATACTCATCACCTAGCGCCACCAGTCTTGCTTTCTCTAATTCTGCTCTTTCCGCCATGCCTGCCTCCGGCCGGCCTGTCAAGGTCATTCCATTGCAGCATCCTAGTACGACGTCCGCCTCCTCGGCCGTTGGTTTCTACGCCGGCACTCTGGTAAAGTCATGGACGACGAAGGTTAAGCGGATGACTTGGATTCACTGGATGGAGCTTCTGTTACCTTGCTCCCGTTGGATTAGAACGTATAAATGGCGGGAGTATTTACAGAGCGATATCTTGTCCGGGATTACTATTGGCATCATGCTCGTTCCGCAGGCAATGTCTTATGCAAAACTAGCCGGGCTTCAACCTATATACGGACTTTGTAAGCAAACAATCTTAATTGAAATAAACTGTCCTGATGGCATTGATGTCTTTTTCTTCCTTACACGGTGCAAACGTTTTCATGCTCATAGATTTGAAAGCCTCTCTGTATTACATAACCTATTTTCATCTAACCTCTGTAACTTTTATTGCAAGGCAGATTCCGGTTTTCTCCCTTTGTTCATCTATGCAATTTTTGGTTCTTCTCGTCAGCTTGCAGTTGGTCCAGTAGCATTGGTTTCTCTACTGGTTTCCAATGTCCTGGGTGGAATTGTCAACTCATCTGAGGAATTATATACTGAACTCGCAATATTATTGGCACTCATGGTTGGAATATTGGAATGCGTGATGGGTCTCTTGAGGCTTGGATGGCTTATTCGCTTTATCAGCCACTCTGTAATCTCTGGCTTTACTACAGCTTCTGCCTTTGTGATTGGATTATCCCAAGTGAAATACTTTCTGGGGTATGATGTATCAAGAAGTAGCAGAATCGTGCCTCTAATTGAGAGCATAATAGCTGGAGCAGACGGGTTCTTATGGGCACCTTTTATAATGGGATCAGTCATCCTTGCGGTACTTCAAATCATGAAGCATTTGGGAAAAACAAGGAAGCACTTACGGTTTCTCAGAGTTGCTGGTCCCCTTACAGCCGTTGTTTTGGGCACAACTTTGACGAAAGTATTAAATCTACCTTCCATTACTTTGGTTGGAGACATTCCCCAAGGCCTTCCAATGTTTTCTATTCCTAAAAGATTTGAGCACGTGAAGTCGTTGATTCCAACTGCCTTTCTGATCACTGGAGTGGCTATATTGGAATCTGTTGGGATTGCGAAAGCATTAGCAGCCAAGAATGGGTATGAGTTAGATTCAAATCAGGAGTTATTTGGCCTTGGAGTAGCCAATGTTGTCGGCTCATTTTTTTCTGCATATCCCACAACAGGTTCTTTCTCAAGATCAGCTGTGAACCATGAAAGTGGAGCAAAAACTAGCTTATCTCAGATTGTTACAGGAATCATTATGGGCGGTGCCCTTCTTTTCTTGACTCCGCTGTTTGAGCACATTCCTCAGTGTGCTTTGGCTGCCATTGTCATCTCTGCGGTTTTAACTTTGGTGGATTACGAGGAAGCTATTTTTTTGTGGCGTATAGATAAGAAAGATTTTCTTCTTTGGGTGATTACTGCCATTACTACGTTGTTCCTTGGTATTGAGATTGGTGTCTTAATTGGGGTGGGTGTTTCACTGGTCTTTGTCATTCACGAATCTGCAAATCCACATATGGCTGTATTGGGGCGTCTTCCTGGCACCACTGTGTATAGAAATATTCAACAGTATCCTGAGGCATATACCTATAATGGGATCGTGATTGTTCGAATTGATGCACCAATTTATTTTGCAAACACAAGTTACATCAAAGACAGGTTACGTGATTATGAAGTTGAAGTGGATCGATTTACTGGTCGTGGACCGGACGTTGAAAGAGTCTATTTTGTGATTATAGAGATGGCACCTGTTACTTACATAGATTCAAGTGCTGTCCAAGCTCTAAAAGAATTGTATCAAGAGTACAAACTTCGCGATATTCAGATTGCCATTTCCAATCCGAATCGAGATGTTCTGCTTACATTTTCAAGATCTGGCGTCGTTGAGCTTATTGGCAAGGAGTGGTTTTTTGTGAGAGTTCATGATGCAGTTCAAGTTTGTCTTCAACATGTGGAGAGCTTAAATGAAACAAACAAAATATCAGATCCATCACCTAAAGATGGATCATCAAGCTTTCTCCAAAGTTTACTGAAGTCTAGAAGTGAGGATTTATCAGACGATGTATCATGGAATAGTCAAGCACTAAGGTTTCTTCGGAGTTCGTTTTACATCAACTCCTTCTTCTTCCCCTTCCTCAGCTGCCTACACGGTTTCTCCTCCTGCTGTTTTGTCACTGCTTTCCTCCGCCATTGTTATTGCACTCCGAAGTTGCAGTTCAAGGCCGACGGATGCGATAAAGGATTCTTAGTGGGGTCTCTGCCGGAACGAGTATATAACTTAATTTCTACTTATCATGCTTTCCACTTCAATGGCCACTTCTCGACCTCTTCTCCATGTGAGGAACTACATTCCTTAGCTGAGACTGAGAGTAATGATGACACATTTCTACCATGGTTGGAACAAAAAGCAGAGATGAAGATCTCGTCAGTGCTTTCTATTGGGAAATCTTCCATTGGAAGGTCTCTGTTTGCTTCTGAGACTATACGGGCTGGAGATTGTATTTTAAAGGTTCCTTTCAATGTGCAAATTTCACCTGATAGTCTTCCTTTACCCATTAGAGATCTTTTAGGCAATGAGATTGGAAATGTTGCCAAGCTTGCTGTTGTGATTCTTCTTGAACAGAAATTGGGCCTGGGCTCTGAATGGGCGCCTTACATTACCCGGCTTCCTCAACCATGGGAGATGCATAACACAATATTTTGGAATGAAAGTGAGTTGGAGATGATTCGTAAAAGCCCTTTGTATGAGGAATCACTTAATCAAAGATCACAGATTGGAAGGGAATTTCTGGCAATCAGGAACGCTCTGGAAACCTTCCCTGAAATTATTGATCGGATCAATTGCGATGATTTCATGCATGCATATTCCCTTGTTACTTCTAGAGCATGGAGAAGCCCGAAGAGTGTCTCTCTGATTCCATTTGCAGATTTTTTAAATCACAATGGCGTTTCAGAAGCAATGGTATTGAATGATGATGAAAAACAGCTCTCTGAGGTCATTGCTGATCGTGATTATGCCCCTGGTGAACATGTACTAATAAGGTATGGAAAATATTCAAATGCTACGCTGATGTTGGACTTTGGGTTTGCGCTTCCATACAACATTCATGATCAGGTACAGGTCCAGGTTAAAACAGTTAAAGATGATCCTTTGGCAGGCGTAAAGTTGGAACTTTGGCAAAGAAGTTGCACACCAGCTACTGAGTATGTTAATGGCGTTCACTCCCTTGGGAATTCTTTCACCATCAGGTGTGCGCTGCTGTGTGAAGTAAACGTTTTTTTTCCCTCCCAAAAATATATCATATTACTTTATTCTGACCATAACCATGGCACCATCAGGGAAGTGAGATGTGCCACTGGGAAAGGGAGAGGTCTTCCCCAATCACTTCGTGCATTTGCTCGTATTTTGTCTTGCACTAATCCTCAGGAATTAAATGAATTAAGTTCTGAAGCTGTTAATGGTGATGGTCGGTTGGCTCGAATTCCACTGAAGAATGTCAATAAAGAGGTTGAAGCACATCGGATTCTGCTTTCTCAATTCAAACAATTAGTTGAAGAGTATAATGCATCTATTGAGGCACTGGGGCCTGTTGATTCTCCCTGTTTGTGCAACAAGTTGGCACGGCGAAGGCTGATGGCTCAACATCTTCTCACCGGTGAGCTTCGCATCCTCAACTCCGCTATTGCTTGGCTGGAGAATTATTGTGATGCCATTTAG 3846 42.56 MEITYSSPSATSLAFSNSALSAMPASGRPVKVIPLQHPSTTSASSAVGFYAGTLVKSWTTKVKRMTWIHWMELLLPCSRWIRTYKWREYLQSDILSGITIGIMLVPQAMSYAKLAGLQPIYGLCKQTILIEINCPDGIDVFFFLTRCKRFHAHRFESLSVLHNLFSSNLCNFYCKADSGFLPLFIYAIFGSSRQLAVGPVALVSLLVSNVLGGIVNSSEELYTELAILLALMVGILECVMGLLRLGWLIRFISHSVISGFTTASAFVIGLSQVKYFLGYDVSRSSRIVPLIESIIAGADGFLWAPFIMGSVILAVLQIMKHLGKTRKHLRFLRVAGPLTAVVLGTTLTKVLNLPSITLVGDIPQGLPMFSIPKRFEHVKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANVVGSFFSAYPTTGSFSRSAVNHESGAKTSLSQIVTGIIMGGALLFLTPLFEHIPQCALAAIVISAVLTLVDYEEAIFLWRIDKKDFLLWVITAITTLFLGIEIGVLIGVGVSLVFVIHESANPHMAVLGRLPGTTVYRNIQQYPEAYTYNGIVIVRIDAPIYFANTSYIKDRLRDYEVEVDRFTGRGPDVERVYFVIIEMAPVTYIDSSAVQALKELYQEYKLRDIQIAISNPNRDVLLTFSRSGVVELIGKEWFFVRVHDAVQVCLQHVESLNETNKISDPSPKDGSSSFLQSLLKSRSEDLSDDVSWNSQALRFLRSSFYINSFFFPFLSCLHGFSSCCFVTAFLRHCYCTPKLQFKADGCDKGFLVGSLPERVYNLISTYHAFHFNGHFSTSSPCEELHSLAETESNDDTFLPWLEQKAEMKISSVLSIGKSSIGRSLFASETIRAGDCILKVPFNVQISPDSLPLPIRDLLGNEIGNVAKLAVVILLEQKLGLGSEWAPYITRLPQPWEMHNTIFWNESELEMIRKSPLYEESLNQRSQIGREFLAIRNALETFPEIIDRINCDDFMHAYSLVTSRAWRSPKSVSLIPFADFLNHNGVSEAMVLNDDEKQLSEVIADRDYAPGEHVLIRYGKYSNATLMLDFGFALPYNIHDQVQVQVKTVKDDPLAGVKLELWQRSCTPATEYVNGVHSLGNSFTIRCALLCEVNVFFPSQKYIILLYSDHNHGTIREVRCATGKGRGLPQSLRAFARILSCTNPQELNELSSEAVNGDGRLARIPLKNVNKEVEAHRILLSQFKQLVEEYNASIEALGPVDSPCLCNKLARRRLMAQHLLTGELRILNSAIAWLENYCDAI 1281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37269096 37291386 - ClCG09G020200.2 Cla09g01967 281387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01967 1281 Gene3D STAS domain 546 693 IPR036513 -
Cla09g01967 1281 ProSiteProfiles STAS domain profile. 566 690 IPR002645 -
Cla09g01967 1281 SUPERFAMILY SpoIIaa-like 568 690 IPR036513 -
Cla09g01967 1281 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 1149 1279 IPR036464 -
Cla09g01967 1281 Pfam SET domain 862 1059 IPR001214 GO:0005515
Cla09g01967 1281 PANTHER SULFATE TRANSPORTER 4.1-RELATED 47 130 - -
Cla09g01967 1281 PANTHER SULFATE TRANSPORTER 4.1-RELATED 178 724 - -
Cla09g01967 1281 Gene3D - 1075 1278 IPR036464 -
Cla09g01967 1281 ProSiteProfiles SET domain profile. 846 1059 IPR001214 GO:0005515
Cla09g01967 1281 Pfam STAS domain 567 686 IPR002645 -
Cla09g01967 1281 SUPERFAMILY SET domain 835 1077 IPR046341 -
Cla09g01967 1281 Pfam Sulfate permease family 90 516 IPR011547 GO:0016021
Cla09g01967 1281 Pfam Rubisco LSMT substrate-binding 1091 1267 IPR015353 -
Cla09g01967 1281 TIGRFAM sulP: sulfate permease 178 686 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla09g01967 1281 CDD STAS_SulP_like_sulfate_transporter 567 683 - -
Cla09g01967 1281 PANTHER SULFATE TRANSPORTER 47 130 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla09g01967 1281 PANTHER SULFATE TRANSPORTER 178 724 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla09g01967 1281 Gene3D set domain protein methyltransferase, domain 1 812 1072 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00638 Cla-Chr1:7380316 Cla09g01967 Cla-Chr9:37269096 1.35E-10 dispersed
Cla05g01391 Cla-Chr5:18744744 Cla09g01967 Cla-Chr9:37269096 5.08E-12 dispersed
Cla09g01967 Cla-Chr9:37269096 Cla03g00848 Cla-Chr3:11354297 1.41E-99 dispersed
Cla09g02129 Cla-Chr9:38874469 Cla09g01967 Cla-Chr9:37269096 1.88E-09 dispersed
Cla09g01967 Cla-Chr9:37269096 Cla11g01499 Cla-Chr11:28656522 5.62E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61781 PF00916 Sulfate_transp 1.90E-112 CL0062 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01967 K18059 - csv:101202870 1175.23