Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g01991 | ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCCGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCCGCTCAGGCTGCGGTGGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGTTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACACGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACGGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCCACAGAAGCAGCCAGGGCTAGGTCCCGATTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCAGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGACAAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG | 1458 | 50.62 | MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAVEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPTNSRRHSGPPKIDASPIKNVAERDFTGESR | 485 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 37477381 | 37480638 | - | ClCG09G020460.2 | Cla09g01991 | 281411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g01991 | 485 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Cla09g01991 | 485 | SMART | iq_5 | 113 | 135 | IPR000048 | GO:0005515 | |
| Cla09g01991 | 485 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 471 | - | - | |
| Cla09g01991 | 485 | Gene3D | iswi atpase | 111 | 149 | - | - | |
| Cla09g01991 | 485 | MobiDBLite | consensus disorder prediction | 324 | 351 | - | - | |
| Cla09g01991 | 485 | MobiDBLite | consensus disorder prediction | 395 | 411 | - | - | |
| Cla09g01991 | 485 | Pfam | IQ calmodulin-binding motif | 117 | 135 | IPR000048 | GO:0005515 | |
| Cla09g01991 | 485 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 1 | 471 | - | - | |
| Cla09g01991 | 485 | MobiDBLite | consensus disorder prediction | 320 | 485 | - | - | |
| Cla09g01991 | 485 | ProSiteProfiles | IQ motif profile. | 114 | 142 | IPR000048 | GO:0005515 | |
| Cla09g01991 | 485 | Coils | Coil | 177 | 197 | - | - | |
| Cla09g01991 | 485 | MobiDBLite | consensus disorder prediction | 377 | 394 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00041 | Cla-Chr1:314069 | Cla09g01991 | Cla-Chr9:37477381 | 3.97E-30 | dispersed | |
| Cla03g01150 | Cla-Chr3:23902721 | Cla09g01991 | Cla-Chr9:37477381 | 6.79E-54 | dispersed | |
| Cla04g00869 | Cla-Chr4:23709528 | Cla09g01991 | Cla-Chr9:37477381 | 5.25E-141 | dispersed | |
| Cla05g00973 | Cla-Chr5:9824932 | Cla09g01991 | Cla-Chr9:37477381 | 1.02E-42 | dispersed | |
| Cla05g01841 | Cla-Chr5:30295536 | Cla09g01991 | Cla-Chr9:37477381 | 1.58E-47 | dispersed | |
| Cla05g02129 | Cla-Chr5:32875646 | Cla09g01991 | Cla-Chr9:37477381 | 4.16E-151 | dispersed | |
| Cla07g00945 | Cla-Chr7:25630415 | Cla09g01991 | Cla-Chr9:37477381 | 3.40E-30 | dispersed | |
| Cla01g00741 | Cla-Chr1:8660538 | Cla09g01991 | Cla-Chr9:37477381 | 5.20E-42 | transposed | |
| Cla01g02298 | Cla-Chr1:36827952 | Cla09g01991 | Cla-Chr9:37477381 | 1.51E-16 | transposed | |
| Cla02g00239 | Cla-Chr2:2439823 | Cla09g01991 | Cla-Chr9:37477381 | 5.76E-18 | transposed | |
| Cla05g00019 | Cla-Chr5:255020 | Cla09g01991 | Cla-Chr9:37477381 | 2.14E-34 | transposed | |
| Cla06g00104 | Cla-Chr6:1096044 | Cla09g01991 | Cla-Chr9:37477381 | 1.75E-44 | transposed | |
| Cla06g00255 | Cla-Chr6:3189292 | Cla09g01991 | Cla-Chr9:37477381 | 4.72E-41 | transposed | |
| Cla10g01493 | Cla-Chr10:30165290 | Cla09g01991 | Cla-Chr9:37477381 | 3.16E-20 | transposed | |
| Cla07g01437 | Cla-Chr7:31605828 | Cla09g01991 | Cla-Chr9:37477381 | 7.86E-29 | transposed | |
| Cla10g01948 | Cla-Chr10:35292344 | Cla09g01991 | Cla-Chr9:37477381 | 5.31E-95 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g01991 | - | - | csv:101209731 | 851.277 |