Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01991 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCCGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCCGCTCAGGCTGCGGTGGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGTTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACACGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACGGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCCACAGAAGCAGCCAGGGCTAGGTCCCGATTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCAGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGACAAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1458 50.62 MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAVEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPTNSRRHSGPPKIDASPIKNVAERDFTGESR 485
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 37477381 37480638 - ClCG09G020460.2 Cla09g01991 281411
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01991 485 MobiDBLite consensus disorder prediction 1 35 - -
Cla09g01991 485 SMART iq_5 113 135 IPR000048 GO:0005515
Cla09g01991 485 PANTHER IQ-DOMAIN 5-RELATED 1 471 - -
Cla09g01991 485 Gene3D iswi atpase 111 149 - -
Cla09g01991 485 MobiDBLite consensus disorder prediction 324 351 - -
Cla09g01991 485 MobiDBLite consensus disorder prediction 395 411 - -
Cla09g01991 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Cla09g01991 485 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 471 - -
Cla09g01991 485 MobiDBLite consensus disorder prediction 320 485 - -
Cla09g01991 485 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Cla09g01991 485 Coils Coil 177 197 - -
Cla09g01991 485 MobiDBLite consensus disorder prediction 377 394 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00041 Cla-Chr1:314069 Cla09g01991 Cla-Chr9:37477381 3.97E-30 dispersed
Cla03g01150 Cla-Chr3:23902721 Cla09g01991 Cla-Chr9:37477381 6.79E-54 dispersed
Cla04g00869 Cla-Chr4:23709528 Cla09g01991 Cla-Chr9:37477381 5.25E-141 dispersed
Cla05g00973 Cla-Chr5:9824932 Cla09g01991 Cla-Chr9:37477381 1.02E-42 dispersed
Cla05g01841 Cla-Chr5:30295536 Cla09g01991 Cla-Chr9:37477381 1.58E-47 dispersed
Cla05g02129 Cla-Chr5:32875646 Cla09g01991 Cla-Chr9:37477381 4.16E-151 dispersed
Cla07g00945 Cla-Chr7:25630415 Cla09g01991 Cla-Chr9:37477381 3.40E-30 dispersed
Cla01g00741 Cla-Chr1:8660538 Cla09g01991 Cla-Chr9:37477381 5.20E-42 transposed
Cla01g02298 Cla-Chr1:36827952 Cla09g01991 Cla-Chr9:37477381 1.51E-16 transposed
Cla02g00239 Cla-Chr2:2439823 Cla09g01991 Cla-Chr9:37477381 5.76E-18 transposed
Cla05g00019 Cla-Chr5:255020 Cla09g01991 Cla-Chr9:37477381 2.14E-34 transposed
Cla06g00104 Cla-Chr6:1096044 Cla09g01991 Cla-Chr9:37477381 1.75E-44 transposed
Cla06g00255 Cla-Chr6:3189292 Cla09g01991 Cla-Chr9:37477381 4.72E-41 transposed
Cla10g01493 Cla-Chr10:30165290 Cla09g01991 Cla-Chr9:37477381 3.16E-20 transposed
Cla07g01437 Cla-Chr7:31605828 Cla09g01991 Cla-Chr9:37477381 7.86E-29 transposed
Cla10g01948 Cla-Chr10:35292344 Cla09g01991 Cla-Chr9:37477381 5.31E-95 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01991 - - csv:101209731 851.277