Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g01991 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCCGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCCGCTCAGGCTGCGGTGGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGTTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACACGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACGGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCCACAGAAGCAGCCAGGGCTAGGTCCCGATTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCAGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGACAAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1458 50.62 MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAVEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPTNSRRHSGPPKIDASPIKNVAERDFTGESR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37477381 37480638 - ClCG09G020460.2 Cla09g01991 281411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g01991 485 MobiDBLite consensus disorder prediction 1 35 - -
Cla09g01991 485 SMART iq_5 113 135 IPR000048 GO:0005515
Cla09g01991 485 PANTHER IQ-DOMAIN 5-RELATED 1 471 - -
Cla09g01991 485 Gene3D iswi atpase 111 149 - -
Cla09g01991 485 MobiDBLite consensus disorder prediction 324 351 - -
Cla09g01991 485 MobiDBLite consensus disorder prediction 395 411 - -
Cla09g01991 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Cla09g01991 485 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 471 - -
Cla09g01991 485 MobiDBLite consensus disorder prediction 320 485 - -
Cla09g01991 485 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Cla09g01991 485 Coils Coil 177 197 - -
Cla09g01991 485 MobiDBLite consensus disorder prediction 377 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g01991 - - - csv:101209731 851.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00041 Cla-Chr1:314069 Cla09g01991 Cla-Chr9:37477381 3.97E-30 dispersed
Cla03g01150 Cla-Chr3:23902721 Cla09g01991 Cla-Chr9:37477381 6.79E-54 dispersed
Cla04g00869 Cla-Chr4:23709528 Cla09g01991 Cla-Chr9:37477381 5.25E-141 dispersed
Cla05g00973 Cla-Chr5:9824932 Cla09g01991 Cla-Chr9:37477381 1.02E-42 dispersed
Cla05g01841 Cla-Chr5:30295536 Cla09g01991 Cla-Chr9:37477381 1.58E-47 dispersed
Cla05g02129 Cla-Chr5:32875646 Cla09g01991 Cla-Chr9:37477381 4.16E-151 dispersed
Cla07g00945 Cla-Chr7:25630415 Cla09g01991 Cla-Chr9:37477381 3.40E-30 dispersed
Cla01g00741 Cla-Chr1:8660538 Cla09g01991 Cla-Chr9:37477381 5.20E-42 transposed
Cla01g02298 Cla-Chr1:36827952 Cla09g01991 Cla-Chr9:37477381 1.51E-16 transposed
Cla02g00239 Cla-Chr2:2439823 Cla09g01991 Cla-Chr9:37477381 5.76E-18 transposed
Cla05g00019 Cla-Chr5:255020 Cla09g01991 Cla-Chr9:37477381 2.14E-34 transposed
Cla06g00104 Cla-Chr6:1096044 Cla09g01991 Cla-Chr9:37477381 1.75E-44 transposed
Cla06g00255 Cla-Chr6:3189292 Cla09g01991 Cla-Chr9:37477381 4.72E-41 transposed
Cla10g01493 Cla-Chr10:30165290 Cla09g01991 Cla-Chr9:37477381 3.16E-20 transposed
Cla07g01437 Cla-Chr7:31605828 Cla09g01991 Cla-Chr9:37477381 7.86E-29 transposed
Cla10g01948 Cla-Chr10:35292344 Cla09g01991 Cla-Chr9:37477381 5.31E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01991 . 1 479 IQD Protein Family AT3G52290 53.8 1.4e-103 373.6
Cla03g01150 . 73 480 IQD Protein Family AT3G22190 57.8 3.4e-97 352.4
Cla05g01841 . 1 438 IQD Protein Family AT2G26180 61.6 4.0e-119 425.2
Cla07g00945 . 106 281 IQD Protein Family AT2G33990 55.3 3.1e-48 189.1
Cla07g00945 . 109 283 IQD Protein Family AT3G15050 62.4 7.5e-55 211.1
Cla01g00741 . 121 476 IQD Protein Family AT5G13460 50.3 1.6e-73 273.9
Cla06g00255 . 1 509 IQD Protein Family AT4G00820 51.4 7.8e-115 411.4
Cla06g00255 . 1 509 IQD Protein Family AT1G01110 50.1 2.5e-110 396.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40